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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0104800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.09 (0.0384) R2 : 0.453
β1 : 1.79 (0.14) R2dD : 0.205 R2D : 0.229
β2 : 1.55 (0.164) R2dC : 0.353 R2C : -0.116
β3 : -1.11 (0.154) R2dE : 0.205 R2E : -0.294
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.702 (0.0818) R2dN8 : 0.12 R2N8 : 0.126
σ : 0.712
deviance : 233.38
__
_____
C
peak time of C : 23.6
E
wheather : radiation
threshold : 24.22
memory length : 107
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
225.36 0.705 5.1 1.76 1.5 -1.1 -2.04 2.62 -0.721 23.4 26.07 99 -- --
233.24 0.711 5.09 1.79 1.55 -1.12 0.19 -- -0.702 23.6 23.78 107 -- --
234.16 0.718 5.08 1.83 1.47 -0.959 -- 0.647 -0.626 22.9 26.07 99 -- --
233.38 0.712 5.09 1.79 1.55 -1.11 -- -- -0.702 23.6 24.22 107 -- --
276.58 0.775 5.04 1.88 -- 0.11 -- 0.833 -0.617 -- 34.47 70 -- --
253.74 0.747 5.06 1.85 0.666 -- -0.171 -- -0.624 21.5 -- -- -- --
253.85 0.746 5.06 1.85 0.666 -- -- -- -0.624 21.5 -- -- -- --
255.5 0.744 5.06 1.79 -- -0.839 -- -- -0.718 -- 72.27 946 -- --
317.36 0.83 5.15 -- 1.74 -1.27 -- -- -0.926 23.7 23.69 105 -- --
279.97 0.782 5.04 1.86 -- -- -- -- -0.625 -- -- -- -- --
344.37 0.868 5.11 -- 0.669 -- -- -- -0.83 21.7 -- -- -- --
333.65 0.851 5.15 -- -- -1.01 -- -- -0.972 -- 16.47 1066 -- --
371.03 0.899 5.09 -- -- -- -- -- -0.831 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 215.65 radiation 20 30 > th dose independent sin 9 NA
5 217.56 humidity 70 90 > th dose independent rect. 1 14
6 217.92 radiation 20 90 < th dose independent rect. 1 13
11 218.93 radiation 30 90 < th dose dependent rect. 1 13
12 219.05 radiation 20 90 < th dose independent sin 10 NA
13 219.25 humidity 70 90 > th dose independent rect. 1 16
14 219.32 humidity 70 30 < th dose independent sin 8 NA
17 219.50 humidity 70 90 > th dose independent sin 9 NA
25 220.01 humidity 70 10 > th dose independent sin 8 NA
48 221.42 radiation 20 90 < th dose independent rect. 1 16
55 222.08 radiation 30 90 < th dose dependent rect. 1 16
58 222.19 radiation 10 90 > th dose dependent sin 11 NA
59 222.19 radiation 20 270 < th dose dependent rect. 23 15
65 222.49 radiation 20 90 < th dose independent rect. 1 10
69 222.67 radiation 30 90 < th dose dependent sin 5 NA
70 222.69 radiation 20 30 > th dose independent rect. 15 23
73 222.77 radiation 10 270 < th dose independent rect. 23 15
84 223.19 radiation 20 90 < th dose dependent rect. 19 23
88 223.31 humidity 70 90 > th dose independent rect. 1 10
110 223.95 radiation 10 270 < th dose independent rect. 23 18
120 224.30 radiation 20 30 > th dose independent rect. 15 21
124 224.31 radiation 10 90 < th dose independent rect. 19 23
132 224.42 radiation 10 270 < th dose independent rect. 23 12
135 224.47 radiation 10 270 < th dose independent rect. 22 21
141 224.56 radiation 20 30 > th dose independent rect. 13 23
149 224.62 radiation 30 30 < th dose dependent rect. 9 23
161 224.85 humidity 80 10 < th dose dependent sin 8 NA
190 225.20 humidity 80 90 < th dose dependent rect. 6 1
194 225.26 radiation 30 30 < th dose dependent rect. 11 23
205 225.37 temperature 20 4320 > th dose independent rect. 21 1
214 225.45 radiation 30 90 < th dose dependent rect. 15 23
222 225.51 humidity 80 90 < th dose independent rect. 6 1
226 225.53 humidity 60 90 > th dose dependent rect. 1 14
227 225.54 temperature 20 4320 > th dose independent rect. 20 3
230 225.56 humidity 70 90 < th dose independent rect. 6 5
259 225.70 radiation 20 270 < th dose dependent rect. 21 22
272 225.87 humidity 60 90 > th dose dependent rect. 1 16
273 225.88 temperature 20 4320 < th dose independent rect. 20 3
277 225.93 radiation 30 90 < th dose dependent no NA NA
280 225.96 radiation 30 30 < th dose dependent rect. 1 23
302 226.14 radiation 1 270 > th dose dependent rect. 7 1
321 226.42 humidity 60 10 > th dose dependent rect. 1 14
336 226.53 radiation 20 30 > th dose independent no NA NA
337 226.53 radiation 20 30 > th dose independent rect. 7 10
448 226.59 humidity 80 1440 < th dose dependent rect. 6 1
468 226.62 temperature 20 4320 < th dose independent rect. 21 1
472 226.64 radiation 20 90 < th dose independent rect. 15 23
487 226.78 radiation 20 30 > th dose independent rect. 7 7
518 226.91 humidity 60 10 > th dose dependent rect. 1 17
544 227.13 radiation 20 90 < th dose independent rect. 9 23
546 227.14 humidity 80 1440 < th dose independent rect. 6 1
549 227.17 radiation 10 270 > th dose independent rect. 7 1
551 227.18 radiation 20 90 < th dose independent no NA NA
573 227.24 radiation 30 30 < th dose dependent rect. 13 23
606 227.38 radiation 20 10 < th dose independent rect. 9 23
611 227.41 radiation 20 30 > th dose independent rect. 16 17
621 227.50 humidity 80 30 < th dose dependent rect. 20 13
637 227.64 humidity 80 90 < th dose dependent rect. 3 4
652 227.65 radiation 20 90 < th dose independent rect. 1 23
656 227.67 humidity 80 90 < th dose independent rect. 3 4
692 227.85 radiation 10 90 < th dose independent rect. 12 23
703 227.90 radiation 10 10 > th dose dependent rect. 16 17
712 227.93 radiation 20 30 > th dose independent rect. 7 5
746 228.01 radiation 30 720 < th dose dependent rect. 1 9
758 228.09 radiation 20 90 < th dose dependent rect. 5 23
767 228.15 humidity 80 1440 > th dose independent rect. 5 2
789 228.25 humidity 80 30 < th dose dependent rect. 1 8
819 228.42 radiation 10 90 > th dose dependent rect. 15 20
829 228.45 radiation 10 30 > th dose dependent rect. 7 2
864 228.55 temperature 10 43200 > th dose independent rect. 15 6
868 228.57 radiation 10 270 > th dose independent rect. 17 18
881 228.62 radiation 20 1440 < th dose dependent rect. 7 3
893 228.67 radiation 10 270 > th dose independent rect. 6 5
935 228.75 humidity 70 10 > th dose independent rect. 9 23