BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0869300 Os01g0869300|AK059347
         (368 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0869300  Conserved hypothetical protein                      712   0.0  
Os04g0501600  HMG-I and HMG-Y, DNA-binding domain containing...    67   2e-11

>Os01g0869300 Conserved hypothetical protein
          Length = 368

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/368 (97%), Positives = 358/368 (97%)

Query: 1   MAGXXXXXXXXXXCGITHKLHILSRIGLLIVKELDKHCKMSDSPRHFPLPSSYFRVSGSA 60
           MAG          CGITHKLHILSRIGLLIVKELDKHCKMSDSPRHFPLPSSYFRVSGSA
Sbjct: 1   MAGDLAEAEDLAECGITHKLHILSRIGLLIVKELDKHCKMSDSPRHFPLPSSYFRVSGSA 60

Query: 61  RKTDRILGAHGPVHPDDTKCSDNAERVSTEVAPDKEARSSLSNIVGQNASCHDKGKRNKK 120
           RKTDRILGAHGPVHPDDTKCSDNAERVSTEVAPDKEARSSLSNIVGQNASCHDKGKRNKK
Sbjct: 61  RKTDRILGAHGPVHPDDTKCSDNAERVSTEVAPDKEARSSLSNIVGQNASCHDKGKRNKK 120

Query: 121 QDQTTNHSLEKEKVSSCGSAGTKLSSPASLGLAKEADSIDSISLLENQNRPESRSSTGET 180
           QDQTTNHSLEKEKVSSCGSAGTKLSSPASLGLAKEADSIDSISLLENQNRPESRSSTGET
Sbjct: 121 QDQTTNHSLEKEKVSSCGSAGTKLSSPASLGLAKEADSIDSISLLENQNRPESRSSTGET 180

Query: 181 RASETDHNYSNRRETVMKDTGTVLVGCRIRLWSARDMCYICGTVETYDQSNGFHKIIYEN 240
           RASETDHNYSNRRETVMKDTGTVLVGCRIRLWSARDMCYICGTVETYDQSNGFHKIIYEN
Sbjct: 181 RASETDHNYSNRRETVMKDTGTVLVGCRIRLWSARDMCYICGTVETYDQSNGFHKIIYEN 240

Query: 241 GDKELVRLECQKWEFISDTISTVKDIPNSHPRCCSFKRVRGKGSADSQNKRQEMLLPGSS 300
           GDKELVRLECQKWEFISDTISTVKDIPNSHPRCCSFKRVRGKGSADSQNKRQEMLLPGSS
Sbjct: 241 GDKELVRLECQKWEFISDTISTVKDIPNSHPRCCSFKRVRGKGSADSQNKRQEMLLPGSS 300

Query: 301 IVCDPDEDGDIDDNFVKQPFSNNRTGVAGLKKNSKRALDSSNAQTSSGLTAFNPVDNVRC 360
           IVCDPDEDGDIDDNFVKQPFSNNRTGVAGLKKNSKRALDSSNAQTSSGLTAFNPVDNVRC
Sbjct: 301 IVCDPDEDGDIDDNFVKQPFSNNRTGVAGLKKNSKRALDSSNAQTSSGLTAFNPVDNVRC 360

Query: 361 TRSRKVQL 368
           TRSRKVQL
Sbjct: 361 TRSRKVQL 368



>Os04g0501600 HMG-I and HMG-Y, DNA-binding domain containing protein
          Length = 846

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 47/240 (19%)

Query: 80  CSDNAERVSTEVAPDKEARSSLSNIVGQNASCHDKGKRNKKQ------DQTTNHSLE-KE 132
            SD+  R +  +A D + +SS     G+  S   K K N KQ      D+ T+  L  K+
Sbjct: 484 VSDSGGRATRRLAKDDDIKSSFKK-TGEGESSKKKQKENLKQQEDTPPDEDTDEDLSLKD 542

Query: 133 KVSSCGSAGTKLSSPASLGLAKEADSIDSISLLENQNRPESRSSTG--ETRASETDHNYS 190
            VS   SA T                         +N+ ++  S G    RA E +    
Sbjct: 543 IVSPKSSAKT------------------------GKNKGQAGDSGGSKRKRAQEAEETPQ 578

Query: 191 NRRETVMKDTGTVLVGCRIRLWSARDMCYICGTVETYDQSNGFHKIIYENGDKELVRLEC 250
            ++  ++K     LVG RI++W   D  +  G VE++D ++  HK++Y++GD E + L+ 
Sbjct: 579 PKKNKILKGN---LVGSRIKVWWPDDRKFYKGVVESFDVASKKHKVVYDDGDVERLHLKN 635

Query: 251 QKWEFISDTISTVKDIPNSHPRCCSFKRVRGKGSADSQNKRQEMLLPGS-----SIVCDP 305
           +KWEFI +      D  +  P        RG+ S   Q K  ++  P S     + V DP
Sbjct: 636 EKWEFIDEGRDNNPDASSDMPHGR-----RGRVSLGEQTKEGKIETPSSGKHRGTDVADP 690



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,258,005
Number of extensions: 523052
Number of successful extensions: 1322
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1321
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 266
Effective length of database: 11,709,973
Effective search space: 3114852818
Effective search space used: 3114852818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)