FiT-DB / Search/ Help/ Sample detail

Os04g0501600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HMG-I and HMG-Y, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0114) R2 : 0.406
β1 : 0.739 (0.0419) R2dD : 0.421 R2D : 0.379
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0956 (0.0244) R2dN8 : 0.0267 R2N8 : -0.0148
σ : 0.215
deviance : 21.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
9.61 0.146 12.3 0.772 0.482 0.195 0.189 -0.331 0.133 16.5 80 659 -- --
9.84 0.146 12.3 0.745 0.488 0.204 0.275 -- 0.133 16.5 81.07 641 -- --
9.69 0.145 12.3 0.777 0.489 0.182 -- -0.375 0.132 16.4 79.9 606 -- --
10.02 0.147 12.3 0.743 0.492 0.181 -- -- 0.129 16.4 80.45 605 -- --
15.68 0.185 12.3 0.752 -- -0.293 -- -0.0145 0.0711 -- 70.66 1179 -- --
10.5 0.152 12.3 0.755 0.436 -- 0.146 -- 0.106 15.8 -- -- -- --
10.56 0.152 12.3 0.757 0.437 -- -- -- 0.107 15.7 -- -- -- --
15.52 0.184 12.3 0.75 -- -0.302 -- -- 0.0736 -- 67.96 1184 -- --
24 0.228 12.3 -- 0.471 0.342 -- -- 0.0898 16.1 83.77 1971 -- --
21.11 0.215 12.3 0.739 -- -- -- -- 0.0956 -- -- -- -- --
25.68 0.237 12.4 -- 0.422 -- -- -- 0.0229 15.7 -- -- -- --
30.34 0.257 12.4 -- -- -0.291 -- -- -0.00869 -- 67.96 1184 -- --
35.52 0.278 12.4 -- -- -- -- -- 0.0136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 9.11 wind 1.0 4320 < th dose independent rect. 3 3
2 9.15 precipitation 0.1 720 < th dose independent rect. 1 22
3 9.15 precipitation 0.1 720 < th dose dependent rect. 1 22
4 9.19 wind 1.0 14400 < th dose dependent rect. 2 3
5 9.20 wind 1.0 4320 > th dose independent rect. 3 3
9 9.22 humidity 90.0 14400 > th dose dependent rect. 4 1
20 9.29 precipitation 0.1 720 < th dose independent rect. 9 14
21 9.29 precipitation 0.1 720 < th dose independent rect. 11 18
22 9.29 precipitation 0.1 720 < th dose dependent rect. 9 14
23 9.29 precipitation 0.1 720 < th dose dependent rect. 11 18
24 9.30 humidity 90.0 720 < th dose independent rect. 11 2
25 9.30 precipitation 0.1 720 < th dose independent rect. 11 10
28 9.30 precipitation 0.1 720 < th dose dependent rect. 11 10
38 9.34 precipitation 0.1 720 < th dose independent rect. 17 6
39 9.34 precipitation 0.1 720 < th dose dependent rect. 17 6
40 9.34 atmosphere 995.0 43200 < th dose dependent rect. 14 13
45 9.36 precipitation 0.1 720 < th dose independent rect. 19 9
46 9.36 precipitation 0.1 720 < th dose independent rect. 16 15
47 9.36 precipitation 0.1 720 < th dose independent rect. 19 18
48 9.36 temperature 25.0 90 < th dose dependent rect. 10 3
49 9.36 precipitation 0.1 720 < th dose dependent rect. 19 9
50 9.36 precipitation 0.1 720 < th dose dependent rect. 16 15
51 9.36 precipitation 0.1 720 < th dose dependent rect. 19 18
53 9.37 temperature 15.0 90 > th dose independent rect. 11 12
65 9.39 humidity 90.0 720 < th dose independent rect. 10 12
70 9.40 atmosphere 1015.0 720 < th dose independent rect. 1 6
71 9.40 temperature 15.0 720 > th dose independent rect. 3 10
72 9.40 wind 9.0 720 < th dose independent rect. 23 18
80 9.41 wind 7.0 720 < th dose independent rect. 5 6
82 9.41 temperature 15.0 720 > th dose independent rect. 1 14
83 9.41 atmosphere 995.0 43200 < th dose independent rect. 17 16
87 9.41 temperature 25.0 270 < th dose dependent rect. 8 6
89 9.42 atmosphere 1015.0 720 < th dose independent rect. 1 14
90 9.42 atmosphere 995.0 43200 > th dose independent rect. 17 16
96 9.43 atmosphere 995.0 43200 > th dose independent sin 11 NA
97 9.43 atmosphere 995.0 43200 < th dose independent sin 11 NA
100 9.43 temperature 15.0 720 > th dose independent rect. 11 2
103 9.43 wind 7.0 270 < th dose independent rect. 13 12
104 9.43 temperature 15.0 720 > th dose independent rect. 13 14
108 9.43 humidity 80.0 720 > th dose dependent rect. 4 12
113 9.44 atmosphere 1015.0 720 < th dose independent rect. 1 12
114 9.44 wind 9.0 720 < th dose independent rect. 13 14
115 9.44 wind 9.0 720 < th dose independent rect. 13 22
129 9.45 atmosphere 1015.0 720 < th dose independent rect. 1 4
141 9.46 wind 9.0 720 < th dose independent rect. 15 10
144 9.46 temperature 15.0 720 > th dose independent rect. 1 12
148 9.46 wind 9.0 720 < th dose independent rect. 7 18
155 9.47 precipitation 0.1 1440 < th dose independent rect. 9 1
162 9.47 temperature 15.0 720 > th dose independent rect. 11 18
164 9.47 precipitation 0.1 1440 < th dose dependent rect. 9 1
165 9.47 humidity 50.0 720 > th dose dependent rect. 23 2
171 9.48 temperature 15.0 720 > th dose independent rect. 15 10
172 9.48 atmosphere 995.0 43200 < th dose dependent sin 15 NA
182 9.49 temperature 15.0 720 > th dose independent rect. 17 6
187 9.49 precipitation 0.1 270 < th dose independent rect. 18 11
193 9.49 temperature 15.0 720 > th dose independent rect. 17 20
198 9.49 precipitation 0.1 270 < th dose dependent rect. 18 11
201 9.49 humidity 80.0 720 > th dose dependent rect. 22 18
207 9.50 wind 9.0 720 < th dose independent rect. 5 20
222 9.51 precipitation 0.1 1440 < th dose independent rect. 9 3
227 9.51 wind 9.0 720 < th dose independent rect. 13 6
230 9.51 humidity 90.0 720 > th dose independent rect. 4 12
231 9.51 humidity 90.0 90 < th dose independent rect. 11 12
234 9.51 temperature 15.0 720 > th dose independent rect. 19 18
241 9.51 precipitation 0.1 1440 < th dose dependent rect. 9 3
253 9.52 wind 3.0 720 > th dose independent rect. 11 2
254 9.52 atmosphere 1000.0 720 > th dose independent rect. 23 2
262 9.52 atmosphere 995.0 43200 < th dose independent rect. 17 13
264 9.52 precipitation 0.1 720 < th dose independent rect. 1 14
269 9.52 humidity 80.0 720 > th dose dependent sin 3 NA
276 9.52 precipitation 0.1 720 < th dose dependent rect. 1 14
284 9.53 precipitation 0.1 270 > th dose independent rect. 9 1
287 9.53 humidity 50.0 270 > th dose independent rect. 10 10
297 9.53 precipitation 0.1 270 > th dose dependent rect. 9 1
300 9.53 humidity 80.0 270 > th dose dependent rect. 8 2
302 9.53 humidity 90.0 720 > th dose dependent rect. 10 3
316 9.54 precipitation 0.1 720 > th dose independent rect. 9 4
325 9.54 atmosphere 1015.0 720 < th dose independent rect. 3 10
330 9.54 atmosphere 1015.0 720 < th dose independent rect. 1 20
340 9.54 precipitation 0.1 720 > th dose dependent rect. 9 4
344 9.54 humidity 50.0 270 > th dose dependent rect. 20 15
358 9.55 temperature 10.0 720 > th dose independent rect. 5 6
359 9.55 atmosphere 995.0 720 > th dose independent rect. 5 6
360 9.55 atmosphere 1015.0 720 < th dose independent rect. 5 6
363 9.55 atmosphere 995.0 720 > th dose independent rect. 3 10
367 9.55 atmosphere 1000.0 90 > th dose independent rect. 23 12
384 9.55 atmosphere 995.0 43200 < th dose dependent rect. 16 9
392 9.56 humidity 90.0 270 > th dose independent rect. 8 2
393 9.56 humidity 90.0 270 > th dose independent rect. 10 2
398 9.56 wind 9.0 720 < th dose independent rect. 13 4
403 9.56 temperature 15.0 720 > th dose independent rect. 1 6
404 9.56 precipitation 0.1 720 < th dose independent rect. 5 6
411 9.56 humidity 60.0 270 > th dose independent rect. 17 12
412 9.56 precipitation 0.1 270 < th dose independent rect. 1 12
425 9.56 precipitation 0.1 720 < th dose dependent rect. 5 6
430 9.56 precipitation 0.1 270 < th dose dependent rect. 1 12
444 9.57 humidity 90.0 720 < th dose independent rect. 17 5
446 9.57 radiation 20.0 720 < th dose independent rect. 17 6
450 9.57 atmosphere 995.0 43200 > th dose independent rect. 18 7
451 9.57 radiation 40.0 720 < th dose independent rect. 15 10
454 9.57 atmosphere 1000.0 270 > th dose independent rect. 20 13
456 9.57 wind 9.0 720 < th dose independent rect. 21 14
461 9.57 temperature 10.0 720 > th dose independent rect. 23 18
462 9.57 humidity 90.0 720 < th dose independent rect. 2 20
466 9.57 wind 9.0 720 < th dose dependent rect. 23 2
495 9.58 wind 7.0 720 < th dose independent rect. 15 2
503 9.58 humidity 50.0 720 > th dose independent rect. 5 6
505 9.58 atmosphere 995.0 43200 < th dose independent rect. 18 7
508 9.58 wind 7.0 720 < th dose independent rect. 23 10
512 9.58 wind 7.0 270 < th dose independent rect. 5 13
514 9.58 atmosphere 1000.0 10 > th dose independent rect. 23 13
521 9.58 temperature 15.0 720 > th dose independent rect. 5 22
522 9.58 precipitation 0.1 720 < th dose independent rect. 9 22
541 9.58 atmosphere 995.0 10 > th dose dependent rect. 12 11
555 9.58 precipitation 0.1 720 < th dose dependent rect. 9 22
559 9.59 humidity 90.0 720 > th dose independent rect. 5 1
560 9.59 wind 7.0 720 < th dose independent rect. 23 2
570 9.59 wind 9.0 720 < th dose independent rect. 7 9
607 9.59 temperature 10.0 90 > th dose dependent rect. 23 12
620 9.60 humidity 90.0 720 > th dose independent sin 3 NA
624 9.60 temperature 10.0 720 > th dose independent rect. 23 2
625 9.60 temperature 30.0 720 < th dose independent rect. 23 2
626 9.60 humidity 50.0 720 > th dose independent rect. 23 2
630 9.60 radiation 1.0 720 < th dose independent rect. 23 2
636 9.60 precipitation 0.1 720 < th dose independent rect. 11 2
637 9.60 temperature 15.0 720 > th dose independent rect. 1 4
638 9.60 humidity 80.0 270 > th dose independent rect. 7 4
643 9.60 precipitation 0.1 720 < th dose independent rect. 1 6
646 9.60 humidity 90.0 720 > th dose independent rect. 4 7
658 9.60 precipitation 0.1 90 < th dose independent rect. 11 12
660 9.60 humidity 50.0 10 > th dose independent rect. 23 13
663 9.60 temperature 10.0 720 > th dose independent rect. 21 14
667 9.60 radiation 30.0 4320 > th dose independent rect. 15 17
673 9.60 temperature 10.0 720 > th dose independent rect. 1 22
675 9.60 radiation 1.0 720 < th dose dependent rect. 23 2
681 9.60 precipitation 0.1 720 < th dose dependent rect. 11 2
688 9.60 precipitation 0.1 720 < th dose dependent rect. 1 6
690 9.60 atmosphere 995.0 43200 < th dose dependent rect. 17 7
694 9.60 precipitation 0.1 90 < th dose dependent rect. 11 12
708 9.60 humidity 80.0 720 > th dose dependent rect. 4 23
715 9.61 atmosphere 995.0 720 > th dose independent rect. 11 2
716 9.61 atmosphere 1015.0 720 < th dose independent rect. 11 2
717 9.61 radiation 1.0 720 > th dose independent rect. 11 2
725 9.61 temperature 30.0 720 < th dose independent rect. 1 6
726 9.61 humidity 50.0 720 > th dose independent rect. 1 6
728 9.61 atmosphere 995.0 720 > th dose independent rect. 1 6
730 9.61 radiation 40.0 720 < th dose independent rect. 1 6
739 9.61 temperature 10.0 720 > th dose independent rect. 23 10
741 9.61 humidity 50.0 720 > th dose independent rect. 23 10
742 9.61 atmosphere 995.0 720 > th dose independent rect. 23 10
743 9.61 temperature 15.0 270 > th dose independent rect. 18 11
745 9.61 temperature 10.0 720 > th dose independent rect. 13 12
746 9.61 atmosphere 995.0 720 > th dose independent rect. 1 12
748 9.61 temperature 10.0 720 > th dose independent rect. 9 14
749 9.61 humidity 50.0 720 > th dose independent rect. 21 14
750 9.61 wind 9.0 720 < th dose independent rect. 4 15
754 9.61 wind 1.0 10 > th dose independent rect. 16 18
756 9.61 temperature 10.0 720 > th dose independent rect. 7 18
760 9.61 temperature 10.0 720 > th dose independent rect. 13 22
789 9.62 temperature 15.0 14400 > th dose independent rect. 8 1
791 9.62 temperature 25.0 270 < th dose independent rect. 10 2
792 9.62 temperature 15.0 14400 > th dose independent rect. 6 3
795 9.62 precipitation 0.1 720 < th dose independent rect. 1 4
797 9.62 wind 9.0 720 < th dose independent rect. 1 6
799 9.62 temperature 10.0 720 > th dose independent rect. 13 6
801 9.62 humidity 80.0 270 > th dose independent rect. 7 6
802 9.62 atmosphere 1015.0 720 < th dose independent rect. 13 6
810 9.62 temperature 30.0 720 < th dose independent rect. 23 10
816 9.62 temperature 15.0 90 > th dose independent rect. 3 12
818 9.62 humidity 50.0 90 > th dose independent rect. 23 12
819 9.62 radiation 30.0 90 < th dose independent rect. 15 12
829 9.62 humidity 90.0 720 < th dose independent rect. 5 17
833 9.62 atmosphere 995.0 720 > th dose independent rect. 19 18
843 9.62 humidity 70.0 43200 < th dose dependent rect. 4 3
846 9.62 precipitation 0.1 720 < th dose dependent rect. 1 4
853 9.62 radiation 1.0 720 < th dose dependent rect. 3 13
869 9.63 precipitation 0.1 720 < th dose independent rect. 23 2
872 9.63 precipitation 0.1 14400 < th dose independent rect. 12 3
882 9.63 wind 1.0 10 > th dose independent rect. 12 11
889 9.63 temperature 10.0 90 > th dose independent rect. 23 12
892 9.63 precipitation 0.1 10 < th dose independent rect. 23 13
908 9.63 humidity 80.0 720 > th dose dependent no NA NA
913 9.63 precipitation 0.1 720 < th dose dependent rect. 23 2
916 9.63 precipitation 0.1 14400 < th dose dependent rect. 12 3
934 9.63 precipitation 0.1 10 < th dose dependent rect. 23 13
954 9.63 humidity 80.0 720 > th dose dependent rect. 2 23
956 9.63 humidity 80.0 720 > th dose dependent rect. 13 23
959 9.64 humidity 90.0 720 < th dose independent sin 2 NA
962 9.64 radiation 40.0 43200 > th dose independent rect. 7 1
963 9.64 humidity 50.0 720 > th dose independent rect. 11 2
976 9.64 wind 9.0 720 < th dose independent rect. 17 6
994 9.64 wind 7.0 10 < th dose independent rect. 16 11
996 9.64 humidity 60.0 30 > th dose independent rect. 12 11
998 9.64 atmosphere 1010.0 10 < th dose independent rect. 12 11