BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0864500 Os01g0864500|AK068115
(238 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0864500 Harpin-induced 1 domain containing protein 424 e-119
Os04g0685300 Harpin-induced 1 domain containing protein 112 3e-25
Os01g0864300 Harpin-induced 1 domain containing protein 87 9e-18
Os12g0159000 Harpin-induced 1 domain containing protein 64 8e-11
>Os01g0864500 Harpin-induced 1 domain containing protein
Length = 238
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/238 (89%), Positives = 213/238 (89%)
Query: 1 MAAYGKPQPPLNDXXXXXXXXXXXXXXXXXXXXXXXXXRRSGAHRLFCCLFRVLAVAVIA 60
MAAYGKPQPPLND RRSGAHRLFCCLFRVLAVAVIA
Sbjct: 1 MAAYGKPQPPLNDAYYGPPIPPPPAAAYYGAAAPPPAPRRSGAHRLFCCLFRVLAVAVIA 60
Query: 61 LGTAVLVLWLIYRPSVVKAYADTAALSRFDLTNGGSLLVYNLTVGMRVRNPNRFGINFRS 120
LGTAVLVLWLIYRPSVVKAYADTAALSRFDLTNGGSLLVYNLTVGMRVRNPNRFGINFRS
Sbjct: 61 LGTAVLVLWLIYRPSVVKAYADTAALSRFDLTNGGSLLVYNLTVGMRVRNPNRFGINFRS 120
Query: 121 VDAQASYDGDRFGYAPLQPLYVGRKSDARFDVTLSGSAAIDDRDVERTYRRETAQGSYEV 180
VDAQASYDGDRFGYAPLQPLYVGRKSDARFDVTLSGSAAIDDRDVERTYRRETAQGSYEV
Sbjct: 121 VDAQASYDGDRFGYAPLQPLYVGRKSDARFDVTLSGSAAIDDRDVERTYRRETAQGSYEV 180
Query: 181 KVRVYARQGFKVRGFRLNNKSKFTCTLNLPAPNSGNGTASGTPTTVFTRKQPKCDVDY 238
KVRVYARQGFKVRGFRLNNKSKFTCTLNLPAPNSGNGTASGTPTTVFTRKQPKCDVDY
Sbjct: 181 KVRVYARQGFKVRGFRLNNKSKFTCTLNLPAPNSGNGTASGTPTTVFTRKQPKCDVDY 238
>Os04g0685300 Harpin-induced 1 domain containing protein
Length = 205
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 43 AHRLFCCLFRVLAVAVIALGTAVLVLWLIYRPSVVKAYADTAALSRFDLTNGGSLLVYNL 102
A LF CL +L ++ LG L+ +LI+RP ++ A D+AAL++F L+ S L Y+L
Sbjct: 19 ACGLFSCLCSILISLLVTLGVLALIFYLIFRPHMIAATVDSAALTQFTLSTN-SALAYSL 77
Query: 103 TVGMRVRNPN-RFGINFRSVDAQASYDGDRFGYAPLQPLYVGRKSDARFDVTLSGSAAID 161
TV + VRNPN R G+ + +V++ A +DG RFGYAPL Y ++ + G +
Sbjct: 78 TVDLTVRNPNKRVGLYYDNVESLALFDGQRFGYAPLDSFYQSTEASTKLSPAFKGQQPLQ 137
Query: 162 DRDVERTYRRETAQGSYEVKVRVYARQGFKVRGFRL-NNKSKFTCTLNLP--APNS 214
+R + G ++++V++ A+ KV F++ K+K +C + +P APN+
Sbjct: 138 GDITAANFRSQQTAGKFDIEVKLNAKLRVKVWAFKVPGPKAKISCPITVPASAPNA 193
>Os01g0864300 Harpin-induced 1 domain containing protein
Length = 241
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 18/200 (9%)
Query: 46 LFCCLFRVLAVAVIALGTAVLVLWLIYRPSVVKAYADTAALSRFDL--TNG---GSLLVY 100
L C RVL + VIA+G LVLWL+ P+ +KAY D+A L+RF+L ++G G LL Y
Sbjct: 49 LCCRAIRVLTIVVIAVGVVALVLWLVSLPNALKAYVDSAELTRFELGGSDGAKRGQLLRY 108
Query: 101 NLTVGMRVRNPNR-FGINFRSVDAQASYDGDRFGYAPLQPLYVGRKSDARFDVTLSGSAA 159
NLTV + +RNPNR + +R ++A Y G+RFGY GRKS + G
Sbjct: 109 NLTVAVSIRNPNRDQAVLYRRLEAVVLYGGERFGYVDFPRTRQGRKSTMVIRPSFVGQGV 168
Query: 160 IDDRDVERTYRRETAQGSYEVKVRVYARQGFKVRGF--RLNNKSKFTCTLNLPAPNSGNG 217
+ + RE +G + + V+++ R KV F + + C + +P P++
Sbjct: 169 LAG---AAAFGREKEEGFFNINVKLHMRVRLKVMVFVDSVEYRPDVDCYIRVPDPSNATA 225
Query: 218 TASGTPTTVFTRKQPKCDVD 237
A G T +C VD
Sbjct: 226 VAMGFTAT-------RCRVD 238
>Os12g0159000 Harpin-induced 1 domain containing protein
Length = 192
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 48 CCLFRVLAVAVIALGTAVLVLWLIYRPSVVKAYADTAALSRFDLTNGGSLLVYNLTVGMR 107
CC L ++ G VL+ W I++P ++A +A L+ +LT G+ + Y L V +
Sbjct: 11 CC--GSLFTFIVTGGFVVLIYWAIFQPHHIRATVASADLT--NLTVAGAAVSYKLAVRLN 66
Query: 108 VRNPN-RFGINFRSVDAQASYDGDRFGYA----PLQPLYVGRKSDARFDVTLSGSAAIDD 162
+ NP+ R I + +D++ + G+R G+A P + Y RKS +G+
Sbjct: 67 LYNPSLRVNIYYDELDSELRFRGERLGHATGATPAE-FYQRRKSSDDVTFEFAGTGVAVA 125
Query: 163 RDVERTYRRETAQGSYEVKVRVYARQGFKVRGFRLNNKSKFTCTLNLPAPNSGNG 217
D +E +GS ++V V + ++ ++ K + C+L +P G G
Sbjct: 126 GDAAGELGKEKGKGSVSLEVAVDGKVRYRFGSIKIRQKPRIWCSLTIPVTADGGG 180
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,542,838
Number of extensions: 291385
Number of successful extensions: 666
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 4
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)