Os01g0864500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os01g0864500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 397.54 | 0.937 | 8.7 | 2.27 | 0.435 | -2.57 | -1.52 | 2.42 | 0.617 | 7.71 | 24.61 | 1386 | -- | -- |
| 400.18 | 0.932 | 8.78 | 1.62 | 0.499 | -2.33 | -1.59 | -- | 0.457 | 7.71 | 24.52 | 1399 | -- | -- |
| 403.62 | 0.936 | 8.7 | 2.24 | 0.45 | -2.6 | -- | 2.49 | 0.622 | 6.9 | 24.64 | 1362 | -- | -- |
| 406.23 | 0.939 | 8.78 | 1.55 | 0.46 | -2.37 | -- | -- | 0.465 | 6.89 | 24.36 | 1373 | -- | -- |
| 414.17 | 0.948 | 8.7 | 2.34 | -- | -2.62 | -- | 2.91 | 0.635 | -- | 24.8 | 1363 | -- | -- |
| 615.79 | 1.16 | 8.86 | 0.785 | 0.444 | -- | -1.42 | -- | 0.108 | 8.81 | -- | -- | -- | -- |
| 622.18 | 1.17 | 8.86 | 0.741 | 0.447 | -- | -- | -- | 0.109 | 9.47 | -- | -- | -- | -- |
| 417.17 | 0.951 | 8.79 | 1.56 | -- | -2.33 | -- | -- | 0.459 | -- | 24.5 | 1397 | -- | -- |
| 464.79 | 1 | 8.84 | -- | 0.444 | -2.02 | -- | -- | 0.207 | 6.7 | 24.84 | 1340 | -- | -- |
| 633.92 | 1.18 | 8.87 | 0.738 | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
| 636.65 | 1.18 | 8.88 | -- | 0.446 | -- | -- | -- | 0.027 | 9.35 | -- | -- | -- | -- |
| 475.6 | 1.02 | 8.85 | -- | -- | -2.02 | -- | -- | 0.21 | -- | 24.9 | 1329 | -- | -- |
| 648.29 | 1.19 | 8.89 | -- | -- | -- | -- | -- | 0.0289 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 397.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 19 |
| 18 | 397.94 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 34 | 398.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 36 | 398.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 49 | 398.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 15 |
| 75 | 399.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 77 | 399.24 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 84 | 399.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 93 | 399.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 357 | 406.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 545 | 409.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 698 | 412.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 888 | 414.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 894 | 414.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 898 | 414.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 899 | 414.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 911 | 414.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 972 | 415.37 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 981 | 415.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |