BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0863400 Os01g0863400|AK068967
         (298 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0863400  Conserved hypothetical protein                      543   e-155
Os02g0659600  Conserved hypothetical protein                      363   e-100

>Os01g0863400 Conserved hypothetical protein
          Length = 298

 Score =  543 bits (1399), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 265/277 (95%), Positives = 265/277 (95%)

Query: 22  AFITGQAQXXXXXXXXXXXXYTVDAASLQRSERQLNEVGIGDDIFNYITQLQKSESGVQP 81
           AFITGQAQ            YTVDAASLQRSERQLNEVGIGDDIFNYITQLQKSESGVQP
Sbjct: 22  AFITGQAQSLPSDPSPDSPLYTVDAASLQRSERQLNEVGIGDDIFNYITQLQKSESGVQP 81

Query: 82  TSEAHLETHKEKHQGNESDLQKLKTSNVVPEIQPVNEKAFQRHSEETLRKKNSHDRSAST 141
           TSEAHLETHKEKHQGNESDLQKLKTSNVVPEIQPVNEKAFQRHSEETLRKKNSHDRSAST
Sbjct: 82  TSEAHLETHKEKHQGNESDLQKLKTSNVVPEIQPVNEKAFQRHSEETLRKKNSHDRSAST 141

Query: 142 QPMREMETRSRYVPPNQSNQSDSAGWSVETLKEILNFAPHEITQAISATEYNRFLASVII 201
           QPMREMETRSRYVPPNQSNQSDSAGWSVETLKEILNFAPHEITQAISATEYNRFLASVII
Sbjct: 142 QPMREMETRSRYVPPNQSNQSDSAGWSVETLKEILNFAPHEITQAISATEYNRFLASVII 201

Query: 202 GFLVVLSNWGLDVGGTITKVLVATRPILFLIVTNITIVFTLLMENKDPNVRGRPAGSNLG 261
           GFLVVLSNWGLDVGGTITKVLVATRPILFLIVTNITIVFTLLMENKDPNVRGRPAGSNLG
Sbjct: 202 GFLVVLSNWGLDVGGTITKVLVATRPILFLIVTNITIVFTLLMENKDPNVRGRPAGSNLG 261

Query: 262 SADNLGQMLEIGLLLQKALSTLLIDCSVCAVIMICFI 298
           SADNLGQMLEIGLLLQKALSTLLIDCSVCAVIMICFI
Sbjct: 262 SADNLGQMLEIGLLLQKALSTLLIDCSVCAVIMICFI 298



>Os02g0659600 Conserved hypothetical protein
          Length = 295

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/278 (66%), Positives = 217/278 (78%), Gaps = 4/278 (1%)

Query: 22  AFITGQAQXXXXXXXXXXXXYTVDAASLQRSERQLNEVGIGDDIFNYITQLQKSE-SGVQ 80
           AFITGQAQ             +VDAA+ Q SER  +E GI  D F+ IT+L KS+ S V 
Sbjct: 21  AFITGQAQTLPSDPLPDSPLNSVDAATPQISERNASEGGISGDKFSNITRLHKSQPSDVV 80

Query: 81  PTSEAHLETHKEKHQGNESDLQKLKTSNVVPEIQPVNEKAFQRHSEETLRKKNSHDRSAS 140
           P S+   +  +E H G+   L++ KTS+ VPEIQPVNE   QRH EETL K+ +HDR+A 
Sbjct: 81  PESQLSAKARQEIHDGDL--LREFKTSSTVPEIQPVNETPMQRHGEETLGKRINHDRTA- 137

Query: 141 TQPMREMETRSRYVPPNQSNQSDSAGWSVETLKEILNFAPHEITQAISATEYNRFLASVI 200
           T   +EMETR + VPPNQSNQ+++A WSVETLKE LNF PHEITQAISATEYNRFLASV 
Sbjct: 138 TVTRKEMETRPKSVPPNQSNQAENAAWSVETLKEHLNFTPHEITQAISATEYNRFLASVA 197

Query: 201 IGFLVVLSNWGLDVGGTITKVLVATRPILFLIVTNITIVFTLLMENKDPNVRGRPAGSNL 260
           + FL VLSNWGLD+GGTIT+VLV TRP+LFLI+TN+TIVFTLLMENKDPNVRGR AGSNL
Sbjct: 198 VAFLAVLSNWGLDIGGTITRVLVGTRPLLFLIITNVTIVFTLLMENKDPNVRGRSAGSNL 257

Query: 261 GSADNLGQMLEIGLLLQKALSTLLIDCSVCAVIMICFI 298
           GSAD+LGQMLEIGLLLQK+L  LL+DCS+CAVI+ICF+
Sbjct: 258 GSADSLGQMLEIGLLLQKSLGALLMDCSICAVILICFL 295



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,910,155
Number of extensions: 297912
Number of successful extensions: 922
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)