BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0857000 Os01g0857000|AK119434
(756 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0857000 NLI interacting factor domain containing protein 1514 0.0
Os02g0639000 NLI interacting factor domain containing protein 523 e-148
Os04g0529500 Similar to C-terminal domain phosphatase-like 1 80 8e-15
>Os01g0857000 NLI interacting factor domain containing protein
Length = 756
Score = 1514 bits (3921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 736/756 (97%), Positives = 736/756 (97%)
Query: 1 MATPRXXXXXXXXXXXXXXXXXXXXMRMFHGDVFLGEAEVFPMKQGAEGSLPFPSNEIRI 60
MATPR MRMFHGDVFLGEAEVFPMKQGAEGSLPFPSNEIRI
Sbjct: 1 MATPRAPPQAAVPGGGAGATAGGVTMRMFHGDVFLGEAEVFPMKQGAEGSLPFPSNEIRI 60
Query: 61 SHLSPTSERCPPLAILQTIAPFSVRCKLQAKLMPPHPSLHRLYLTCFNEYKSAVVVVGDE 120
SHLSPTSERCPPLAILQTIAPFSVRCKLQAKLMPPHPSLHRLYLTCFNEYKSAVVVVGDE
Sbjct: 61 SHLSPTSERCPPLAILQTIAPFSVRCKLQAKLMPPHPSLHRLYLTCFNEYKSAVVVVGDE 120
Query: 121 ELHLVAMPSKVEKVPCFWCCSVRSGIYAASVGMLNLRCLAIVFDLDETLIVANTMKSFED 180
ELHLVAMPSKVEKVPCFWCCSVRSGIYAASVGMLNLRCLAIVFDLDETLIVANTMKSFED
Sbjct: 121 ELHLVAMPSKVEKVPCFWCCSVRSGIYAASVGMLNLRCLAIVFDLDETLIVANTMKSFED 180
Query: 181 RIEMLSRRMDIEDDPVRIAGMSAEIKRYIEDRELLKEFIDTDTVTDNGRIVGTQKEEVLP 240
RIEMLSRRMDIEDDPVRIAGMSAEIKRYIEDRELLKEFIDTDTVTDNGRIVGTQKEEVLP
Sbjct: 181 RIEMLSRRMDIEDDPVRIAGMSAEIKRYIEDRELLKEFIDTDTVTDNGRIVGTQKEEVLP 240
Query: 241 ISGGQERVLRPVIRLPERNAILTRINPEVRDTSVFVKLRPAWEDLRSYLTAKGRKRFEVY 300
ISGGQERVLRPVIRLPERNAILTRINPEVRDTSVFVKLRPAWEDLRSYLTAKGRKRFEVY
Sbjct: 241 ISGGQERVLRPVIRLPERNAILTRINPEVRDTSVFVKLRPAWEDLRSYLTAKGRKRFEVY 300
Query: 301 VCTMAERDYALEMWRLLDPEANLISSHNLAERVVCVKSGSKKCLQNVFKDKGCHPKMAMV 360
VCTMAERDYALEMWRLLDPEANLISSHNLAERVVCVKSGSKKCLQNVFKDKGCHPKMAMV
Sbjct: 301 VCTMAERDYALEMWRLLDPEANLISSHNLAERVVCVKSGSKKCLQNVFKDKGCHPKMAMV 360
Query: 361 IDDRLQVWDEKDQPRVHVVPAYTPYYAPQAEMANAVPVLCVARNVACNVRGGFFREFDEN 420
IDDRLQVWDEKDQPRVHVVPAYTPYYAPQAEMANAVPVLCVARNVACNVRGGFFREFDEN
Sbjct: 361 IDDRLQVWDEKDQPRVHVVPAYTPYYAPQAEMANAVPVLCVARNVACNVRGGFFREFDEN 420
Query: 421 LLRKVFELMYENELLDLPYAPDVGDYLVCEDTNFAPNNKDVAPIPEGMSGAEVGKRLNGL 480
LLRKVFELMYENELLDLPYAPDVGDYLVCEDTNFAPNNKDVAPIPEGMSGAEVGKRLNGL
Sbjct: 421 LLRKVFELMYENELLDLPYAPDVGDYLVCEDTNFAPNNKDVAPIPEGMSGAEVGKRLNGL 480
Query: 481 AYPRDQKQIPSSTRLSDDDGVALRGIPGGTNIQSNGGSLATTPSLFVTVLQEIGRLCESR 540
AYPRDQKQIPSSTRLSDDDGVALRGIPGGTNIQSNGGSLATTPSLFVTVLQEIGRLCESR
Sbjct: 481 AYPRDQKQIPSSTRLSDDDGVALRGIPGGTNIQSNGGSLATTPSLFVTVLQEIGRLCESR 540
Query: 541 VEFRSTVSSGKNMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQNLESNYLSFMAPV 600
VEFRSTVSSGKNMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQNLESNYLSFMAPV
Sbjct: 541 VEFRSTVSSGKNMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQNLESNYLSFMAPV 600
Query: 601 AGVLNKDVNKPPGSGNGFLEDITLSEDISMEEPSGSTLKEQDHSKALDRLSSVISLIREL 660
AGVLNKDVNKPPGSGNGFLEDITLSEDISMEEPSGSTLKEQDHSKALDRLSSVISLIREL
Sbjct: 601 AGVLNKDVNKPPGSGNGFLEDITLSEDISMEEPSGSTLKEQDHSKALDRLSSVISLIREL 660
Query: 661 CLEDQHVVFRDQVRDSGSALNGEYHFQAELGGQILGRGIDLNKDFAKLQAAEEALKTLKT 720
CLEDQHVVFRDQVRDSGSALNGEYHFQAELGGQILGRGIDLNKDFAKLQAAEEALKTLKT
Sbjct: 661 CLEDQHVVFRDQVRDSGSALNGEYHFQAELGGQILGRGIDLNKDFAKLQAAEEALKTLKT 720
Query: 721 TTDPQIKKHLRPMQQLNFPLYPTEVSLIMLKCEASC 756
TTDPQIKKHLRPMQQLNFPLYPTEVSLIMLKCEASC
Sbjct: 721 TTDPQIKKHLRPMQQLNFPLYPTEVSLIMLKCEASC 756
>Os02g0639000 NLI interacting factor domain containing protein
Length = 940
Score = 523 bits (1346), Expect = e-148, Method: Compositional matrix adjust.
Identities = 263/459 (57%), Positives = 336/459 (73%), Gaps = 12/459 (2%)
Query: 28 MFHGDVFLGEAEVFPMKQGAEGSLPFPSNEIRISHLSPTSERCPPLAILQTIAPFSVRCK 87
++ G+ +GE EV+P + + + + EIR+ LSP SERC PLA++ T+A RC
Sbjct: 6 VYFGNTSIGEVEVWPSGDASLAAAAW-AREIRVDRLSPPSERCQPLAVMHTVA-VGARCL 63
Query: 88 L------QAKLMPPHPSLHRLYLTCFNEYKSAVVVVGDEELHLVAMPSK--VEKVPCFWC 139
+ +A PP P L ++ C E K+AVV +G+EELHLVAM S+ + CFW
Sbjct: 64 VMESRLPKAADEPPQP-LVAMHAACLKENKTAVVPLGEEELHLVAMTSRRNLTNHACFWG 122
Query: 140 CSVRSGIYAASVGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEMLSRRMDIEDDPVRIA 199
V G+Y + + MLNLRCL IVFDLDETLIVANT +SFEDRI+ L R++ E DP RI
Sbjct: 123 YKVPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFEDRIDALQRKLSNETDPQRIN 182
Query: 200 GMSAEIKRYIEDRELLKEFIDTDTVTDNGRIVGTQKEEVLPISGGQERVLRPVIRLPERN 259
GM AEIKRY +D+ +LK++I+ D V D+G++ Q E V P+S + + RPVIRL E+N
Sbjct: 183 GMIAEIKRYQDDKSILKQYIEGDQVYDDGKMYKVQPELVPPLSDNHQPMTRPVIRLQEKN 242
Query: 260 AILTRINPEVRDTSVFVKLRPAWEDLRSYLTAKGRKRFEVYVCTMAERDYALEMWRLLDP 319
ILTRINP +RDTSV V+LRPAWEDLRSYL A+GRKRFEVYVCTMAERDYALEMWRLLDP
Sbjct: 243 IILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLLDP 302
Query: 320 EANLISSHNLAERVVCVKSGSKKCLQNVFKDKGCHPKMAMVIDDRLQVWDEKDQPRVHVV 379
++ LI+S L +R+VCVKSG +K L NVF D CHP MA+VIDDRL+VWDEKDQ RVHVV
Sbjct: 303 DSRLINSVQLNDRMVCVKSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVV 362
Query: 380 PAYTPYYAPQAEMANAVPVLCVARNVACNVRGGFFREFDENLLRKVFELMYENELLDLPY 439
PA+TPYYAPQAE ++PVLCVARNVACNVRGGFF++FDE LL ++ + YE+E+ ++P
Sbjct: 363 PAFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDFDEGLLPRISNVFYEDEINEIPS 422
Query: 440 APDVGDYLVCEDTNFAPNNKDVAPIP-EGMSGAEVGKRL 477
APDVG+YL+ ED N A N + P+ +GM+ AEV +R+
Sbjct: 423 APDVGNYLISEDENVAAVNGNRDPLAFDGMADAEVERRM 461
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 124/254 (48%), Gaps = 21/254 (8%)
Query: 486 QKQIPSSTRLSDDDGVALRGIPGG--TNIQSNGGSLATTPSLFVTVLQEIGRLCESRVEF 543
Q PS R + +A R + N G A +L+EI C S+VE+
Sbjct: 657 QNHAPSRYRSFPGEELATRHVSSSQRNNQIVPGQHFARHAGSSAGILEEIAMKCGSKVEY 716
Query: 544 RSTVSSGKNMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQNLESNYLSF------- 596
RS + ++QFS+EV EK+G GIG+TR EAQ AAE +L+NL + YLS
Sbjct: 717 RSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNLANKYLSSDPNKMTD 776
Query: 597 MAPVAGVLNKDVNKPPGSGNGFLEDITLSEDISMEEPSGSTLKEQDHSKALDRLSSVISL 656
M N ++ PG+ D L + EE + E + KA I+
Sbjct: 777 MKENGFGSNTNIFGYPGNS----RDDVLPIASTSEETRFVKMGENNSRKA----GGSIAA 828
Query: 657 IRELCL-EDQHVVFRDQVRDS-GSALNGEYHFQAELGGQILGRGIDLNKDFAKLQAAEEA 714
++ELC E ++VF Q R S S++ E + + E+ GQILG G+ + + AKLQAA+EA
Sbjct: 829 LKELCTAEGYNLVF--QARTSPDSSVGKEAYAEVEVCGQILGNGVGITWEDAKLQAADEA 886
Query: 715 LKTLKTTTDPQIKK 728
L L++ P +K
Sbjct: 887 LGMLRSMLGPLAQK 900
>Os04g0529500 Similar to C-terminal domain phosphatase-like 1
Length = 125
Score = 79.7 bits (195), Expect = 8e-15, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 31 GDVFLGEAEVFPMKQGAEGSLPFPSNEIRISHLSPTSERCPPLAILQTIAP----FSVRC 86
G +G EV+P K G + ++ + EIR+ HLSP SERCPPLA+L +A +
Sbjct: 1 GSTSIGHVEVWP-KGGTDLAVAAWAREIRVDHLSPPSERCPPLAVLHAVAAGGRCLVMES 59
Query: 87 KLQAKLMPPHPSLHRLYLTCFNEYKSAVVVVGDEELHLVAMPSK--VEKVPCFW 138
+ A P P L ++ C + K+AV +G EE+HLVAM SK + + CFW
Sbjct: 60 RPTATADEPPPPLVAMHAACLRDGKTAVFPLGAEEIHLVAMTSKRNLPNLACFW 113
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,641,595
Number of extensions: 1126738
Number of successful extensions: 2303
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2299
Number of HSP's successfully gapped: 4
Length of query: 756
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 648
Effective length of database: 11,396,689
Effective search space: 7385054472
Effective search space used: 7385054472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)