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Os01g0857000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NLI interacting factor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.09 (0.0152) R2 : 0.437
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.695 (0.0371) R2dC : 0.435 R2C : 0.431
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0604 (0.0319) R2dN8 : 0.00572 R2N8 : 0.00163
σ : 0.286
deviance : 37.27
__
_____
C
peak time of C : 9.68
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.92 0.244 9.11 -0.534 0.432 -0.373 -0.147 -0.332 -0.129 7.13 1.131 49 -- --
27.47 0.244 9.11 -0.541 0.43 -0.371 0.0719 -- -0.13 7.21 1.16 51 -- --
26.95 0.242 9.11 -0.535 0.432 -0.379 -- -0.297 -0.132 7.07 1.15 51 -- --
27.48 0.244 9.11 -0.541 0.425 -0.383 -- -- -0.131 7.04 1.22 49 -- --
34.69 0.276 9.12 -0.537 -- -0.465 -- -0.191 -0.122 -- 1.15 51 -- --
29.95 0.257 9.1 -0.527 0.694 -- 0.265 -- -0.118 9.67 -- -- -- --
30.21 0.257 9.1 -0.517 0.694 -- -- -- -0.118 9.63 -- -- -- --
34.9 0.276 9.12 -0.539 -- -0.467 -- -- -0.124 -- 1.306 23 -- --
35.09 0.276 9.1 -- 0.435 -0.353 -- -- -0.0741 7.4 2.095 51 -- --
58.71 0.358 9.12 -0.523 -- -- -- -- -0.117 -- -- -- -- --
37.27 0.286 9.09 -- 0.695 -- -- -- -0.0604 9.68 -- -- -- --
42.53 0.305 9.11 -- -- -0.464 -- -- -0.0645 -- 1.41 43 -- --
65.93 0.379 9.11 -- -- -- -- -- -0.0586 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.71 temperature 25.0 10 > th dose independent rect. 1 10
4 24.84 temperature 20.0 720 > th dose dependent rect. 4 3
19 25.29 temperature 15.0 90 > th dose dependent rect. 4 7
39 25.62 temperature 10.0 720 > th dose dependent rect. 23 9
40 25.62 temperature 20.0 720 > th dose dependent rect. 23 9
57 25.73 temperature 10.0 30 > th dose dependent rect. 5 13
60 25.74 temperature 30.0 720 < th dose dependent rect. 24 10
63 25.76 temperature 30.0 720 < th dose dependent rect. 1 4
65 25.76 temperature 30.0 720 < th dose dependent rect. 1 8
71 25.80 atmosphere 995.0 90 > th dose dependent rect. 11 17
90 25.90 temperature 20.0 720 > th dose independent rect. 4 2
91 25.90 radiation 20.0 30 < th dose dependent sin 11 NA
101 25.95 temperature 20.0 270 > th dose independent rect. 4 4
104 25.98 temperature 25.0 270 < th dose independent rect. 7 7
132 26.06 temperature 10.0 30 > th dose dependent rect. 5 17
159 26.13 temperature 10.0 1440 > th dose independent rect. 5 7
163 26.13 atmosphere 995.0 1440 > th dose independent rect. 5 7
165 26.13 temperature 10.0 1440 > th dose independent rect. 12 17
197 26.19 radiation 1.0 30 > th dose independent rect. 14 21
205 26.20 wind 5.0 90 < th dose dependent rect. 5 6
214 26.22 radiation 1.0 30 > th dose independent rect. 16 19
254 26.30 humidity 60.0 90 > th dose independent rect. 4 7
261 26.31 atmosphere 995.0 270 > th dose independent rect. 7 21
267 26.32 atmosphere 1005.0 90 > th dose independent rect. 11 17
277 26.33 atmosphere 995.0 270 > th dose dependent rect. 8 20
278 26.34 humidity 80.0 270 > th dose independent rect. 4 3
288 26.35 atmosphere 995.0 1440 > th dose independent rect. 12 3
291 26.35 humidity 80.0 270 > th dose dependent rect. 5 1
292 26.35 wind 5.0 270 < th dose dependent rect. 4 4
298 26.36 atmosphere 995.0 720 > th dose independent rect. 17 2
303 26.37 temperature 25.0 270 < th dose independent rect. 9 2
305 26.37 wind 3.0 270 < th dose independent rect. 4 4
309 26.37 temperature 30.0 270 < th dose dependent rect. 7 7
319 26.40 atmosphere 995.0 1440 > th dose independent rect. 10 5
327 26.42 humidity 90.0 270 > th dose independent rect. 5 1
329 26.42 wind 9.0 30 < th dose dependent rect. 5 13
335 26.43 temperature 20.0 10 > th dose dependent rect. 1 10
338 26.44 wind 3.0 30 < th dose independent rect. 5 6
339 26.44 temperature 30.0 30 < th dose independent rect. 11 18
345 26.45 atmosphere 995.0 720 > th dose independent rect. 17 10
346 26.45 temperature 20.0 30 > th dose independent rect. 5 13
361 26.47 atmosphere 995.0 270 > th dose dependent rect. 9 18
365 26.48 temperature 20.0 720 > th dose independent rect. 23 8
367 26.48 temperature 30.0 270 < th dose independent rect. 23 14
368 26.48 atmosphere 995.0 30 > th dose independent rect. 11 18
372 26.48 temperature 30.0 270 < th dose dependent rect. 9 1
377 26.49 radiation 1.0 90 < th dose independent sin 10 NA
392 26.51 temperature 20.0 720 < th dose independent rect. 2 3
397 26.51 radiation 1.0 30 > th dose independent rect. 16 17
425 26.54 wind 3.0 270 < th dose dependent rect. 5 2
430 26.55 atmosphere 1015.0 270 < th dose dependent rect. 5 1
445 26.56 atmosphere 1015.0 30 < th dose dependent rect. 5 17
453 26.58 temperature 30.0 270 < th dose independent rect. 8 20
454 26.58 humidity 70.0 270 > th dose dependent rect. 4 3
460 26.59 radiation 40.0 10 < th dose independent rect. 5 6
463 26.59 wind 9.0 270 < th dose independent rect. 13 10
464 26.59 atmosphere 1005.0 90 > th dose independent rect. 17 12
475 26.60 wind 7.0 30 < th dose independent rect. 5 13
481 26.60 atmosphere 1015.0 90 < th dose dependent rect. 5 4
489 26.61 atmosphere 995.0 720 > th dose independent rect. 24 19
501 26.62 temperature 30.0 30 < th dose independent rect. 18 11
537 26.65 temperature 25.0 10 > th dose independent rect. 1 17
539 26.65 atmosphere 1015.0 30 < th dose independent rect. 11 18
540 26.65 precipitation 0.1 30 < th dose independent rect. 11 18
546 26.65 precipitation 0.1 30 < th dose dependent rect. 11 18
557 26.67 temperature 10.0 270 > th dose independent rect. 13 10
558 26.67 temperature 10.0 270 > th dose independent rect. 23 14
559 26.67 atmosphere 995.0 270 > th dose independent rect. 23 14
573 26.68 atmosphere 995.0 720 > th dose independent rect. 16 13
574 26.68 atmosphere 1015.0 270 < th dose independent rect. 23 14
590 26.69 temperature 10.0 1440 > th dose independent rect. 19 10
593 26.69 temperature 30.0 1440 < th dose independent rect. 19 10
597 26.69 humidity 50.0 1440 > th dose independent rect. 19 10
599 26.69 atmosphere 995.0 1440 > th dose independent rect. 19 10
600 26.69 radiation 20.0 1440 < th dose independent rect. 19 10
612 26.69 temperature 10.0 1440 > th dose independent rect. 5 14
624 26.70 radiation 10.0 270 < th dose independent rect. 5 1
628 26.70 wind 5.0 90 < th dose independent rect. 18 11
633 26.70 temperature 30.0 720 < th dose dependent sin 7 NA
638 26.71 temperature 10.0 1440 > th dose independent rect. 5 5
642 26.71 atmosphere 995.0 1440 > th dose independent rect. 5 5
643 26.71 atmosphere 1015.0 1440 < th dose independent rect. 5 5
647 26.71 temperature 20.0 720 > th dose independent rect. 21 10
649 26.71 temperature 10.0 1440 > th dose independent rect. 10 19
663 26.72 atmosphere 995.0 30 > th dose independent rect. 5 6
664 26.72 atmosphere 1015.0 30 < th dose independent rect. 5 6
665 26.72 precipitation 0.1 30 < th dose independent rect. 5 6
667 26.72 temperature 10.0 30 > th dose independent rect. 11 18
671 26.72 temperature 30.0 720 < th dose dependent rect. 7 2
678 26.72 precipitation 0.1 30 < th dose dependent rect. 5 6
685 26.72 radiation 1.0 30 < th dose dependent rect. 18 22
696 26.73 humidity 60.0 30 > th dose independent rect. 18 11
706 26.74 radiation 1.0 30 < th dose independent rect. 18 12
717 26.74 temperature 10.0 270 > th dose dependent rect. 3 19
718 26.75 radiation 1.0 30 > th dose independent sin 11 NA
732 26.75 radiation 1.0 30 < th dose dependent rect. 18 20
744 26.76 radiation 1.0 30 < th dose dependent rect. 18 11
755 26.77 wind 9.0 270 < th dose independent rect. 23 14
767 26.78 radiation 20.0 270 < th dose independent rect. 4 3
795 26.79 radiation 1.0 30 < th dose independent rect. 18 22
799 26.79 atmosphere 995.0 30 > th dose dependent rect. 18 11
815 26.81 precipitation 0.1 270 < th dose independent rect. 4 3
816 26.81 radiation 30.0 270 < th dose independent rect. 3 5
819 26.81 radiation 1.0 30 < th dose independent rect. 18 20
826 26.81 precipitation 0.1 270 < th dose dependent rect. 4 3
832 26.81 radiation 1.0 720 < th dose dependent rect. 22 13
837 26.81 atmosphere 1015.0 270 < th dose dependent rect. 13 19
839 26.82 radiation 1.0 720 > th dose independent rect. 5 2
846 26.82 atmosphere 995.0 720 > th dose independent rect. 8 11
848 26.82 atmosphere 995.0 720 > th dose independent rect. 7 13
861 26.83 temperature 10.0 720 > th dose dependent sin 9 NA
871 26.84 temperature 10.0 270 > th dose independent rect. 4 3
873 26.84 temperature 30.0 270 < th dose independent rect. 4 3
874 26.84 humidity 50.0 270 > th dose independent rect. 4 3
876 26.84 atmosphere 995.0 270 > th dose independent rect. 4 3
877 26.84 atmosphere 1015.0 270 < th dose independent rect. 4 3
906 26.84 temperature 10.0 270 > th dose independent rect. 7 21
919 26.85 temperature 30.0 30 < th dose independent rect. 5 6
923 26.85 precipitation 0.1 270 < th dose independent rect. 7 21
935 26.85 precipitation 0.1 270 < th dose dependent rect. 7 21
936 26.86 wind 3.0 270 < th dose independent rect. 5 1
937 26.86 precipitation 0.1 270 < th dose independent rect. 3 5
944 26.86 precipitation 0.1 270 < th dose dependent rect. 3 5
964 26.87 precipitation 0.1 270 < th dose independent rect. 8 19
969 26.87 precipitation 0.1 270 < th dose dependent rect. 8 19
987 26.88 wind 1.0 4320 < th dose dependent rect. 4 5
990 26.88 atmosphere 1015.0 30 < th dose dependent rect. 5 6
994 26.88 radiation 1.0 30 < th dose dependent rect. 22 23