BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0857000 Os01g0857000|AK119434
         (756 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01270.2  | chr5:107943-112143 REVERSE LENGTH=775              600   e-172
AT4G21670.1  | chr4:11511511-11516922 FORWARD LENGTH=968          532   e-151

>AT5G01270.2 | chr5:107943-112143 REVERSE LENGTH=775
          Length = 774

 Score =  600 bits (1548), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/467 (63%), Positives = 358/467 (76%), Gaps = 4/467 (0%)

Query: 28  MFHGDVFLGEAEVFPMKQGAEGSLPFPSNEIRISHLSPTSERCPPLAILQTIAPFSVRCK 87
           ++HGD+ LGE +V  +    E    FP++EIRI HLSP  ERCPPLAILQTIA F+VRCK
Sbjct: 10  VYHGDLRLGELDVNHVSSSHE--FRFPNDEIRIHHLSPAGERCPPLAILQTIASFAVRCK 67

Query: 88  LQAKLMPPHPSLHRLYLTCFNEYKSAVVVVGDEELHLVAMPSKVEKVPCFWCCSVRSGIY 147
           L++        L  L+  CF+E K+AVV++GDEE+HLVAMPSK +K PCFWC SV SG+Y
Sbjct: 68  LESSAPVKSQELMHLHAVCFHELKTAVVMLGDEEIHLVAMPSKEKKFPCFWCFSVPSGLY 127

Query: 148 AASVGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEMLSRRMDIEDDPVRIAGMSAEIKR 207
            + + MLN RCL+IVFDLDETLIVANTMKSFEDRIE L   +  E DPVRI GMSAE+KR
Sbjct: 128 DSCLRMLNTRCLSIVFDLDETLIVANTMKSFEDRIEALKSWISREMDPVRINGMSAELKR 187

Query: 208 YIEDRELLKEFIDTDTVTDNGRIVGTQKEEVLPISGGQERVLRPVIRLPERNAILTRINP 267
           Y++DR LLK++ID D   DNG ++  Q EEV P S GQE+V RPVIRLPE+N +LTRI P
Sbjct: 188 YMDDRMLLKQYIDNDYAFDNGVLLKAQPEEVRPTSDGQEKVCRPVIRLPEKNTVLTRIKP 247

Query: 268 EVRDTSVFVKLRPAWEDLRSYLTAKGRKRFEVYVCTMAERDYALEMWRLLDPEANLISSH 327
           E+RDTSV VKLRPAWE+LRSYLTAK RKRFEVYVCTMAERDYALEMWRLLDPEA+LIS  
Sbjct: 248 EIRDTSVLVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRLLDPEAHLISLK 307

Query: 328 NLAERVVCVKSGSKKCLQNVFKDKGCHPKMAMVIDDRLQVWDEKDQPRVHVVPAYTPYYA 387
            L +R+VCVK  +KK L +VF    CHPKMAMVIDDR++VW++KDQPRVHVV AY PYYA
Sbjct: 308 ELRDRIVCVKPDAKKSLLSVFNGGICHPKMAMVIDDRMKVWEDKDQPRVHVVSAYLPYYA 367

Query: 388 PQAEMANAVPVLCVARNVACNVRGGFFREFDENLLRKVFELMYENELLDLPYAPDVGDYL 447
           PQAE A  VP LCVARNVACNVRG FF+EFDE+L+  +  + YE+++ +LP +PDV +Y+
Sbjct: 368 PQAETALVVPHLCVARNVACNVRGYFFKEFDESLMSSISLVYYEDDVENLPPSPDVSNYV 427

Query: 448 VCEDTNFAPN-NKDVAPIPEGMSGAEVGKRLNGLAYPRDQKQIPSST 493
           V ED  FA N N +  PI EGM G EV +RLN  A   D   +P+++
Sbjct: 428 VIEDPGFASNGNINAPPINEGMCGGEVERRLNQAAA-ADHSTLPATS 473




 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 93/146 (63%), Gaps = 10/146 (6%)

Query: 486 QKQIPSSTRLSDDDGVALRG-IPGGTNIQSNGG-SLATTPSLFVTVLQEIGRLCESRVEF 543
           ++Q PS  R + + G++    +  G    ++GG S      LFV+ LQEIGR C S+VEF
Sbjct: 617 KRQNPS--RQTTEGGISQNHLVSNGREHHTDGGKSNGGQSHLFVSALQEIGRRCGSKVEF 674

Query: 544 RSTVSSGKNMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQNLESNYLSFMAPVAGV 603
           R+ +S+ K +QFSVEVLF+ EKIGIG+ KT+ +A   AAE AL++L   Y++ +AP+A  
Sbjct: 675 RTVISTNKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAAENALRSLAEKYVAHVAPLA-- 732

Query: 604 LNKDVNKPPGSGNGFLEDITLSEDIS 629
             ++  K P + NGFL +   SED+S
Sbjct: 733 --RETEKGPENDNGFLWES--SEDVS 754



>AT4G21670.1 | chr4:11511511-11516922 FORWARD LENGTH=968
          Length = 967

 Score =  532 bits (1371), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 271/467 (58%), Positives = 338/467 (72%), Gaps = 19/467 (4%)

Query: 28  MFHGDVFLGEAEVFP-----------MKQGAEGS---LPFPSNEIRISHLSPTSERCPPL 73
           +FHGD  LGE E++P           MKQ  +     +      IRISH S + ERCPPL
Sbjct: 9   VFHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPL 68

Query: 74  AILQTIAPFSVRCKLQAKLMPPHPSLHRLYLTCFNEYKSAVVVVGDEELHLVAMPSKVEK 133
           AIL TI+   +  KL+A   P   SL   Y +C  + K+AV+++G EELHLVAM S+  K
Sbjct: 69  AILTTISSCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLLGGEELHLVAMYSENIK 128

Query: 134 --VPCFWCCSVRSGIYAASVGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEMLSRRMDI 191
              PCFW  SV  GIY + + MLNLRCL IVFDLDETL+VANTM+SFED+I+   RR++ 
Sbjct: 129 NDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDGFQRRINN 188

Query: 192 EDDPVRIAGMSAEIKRYIEDRELLKEFIDTDTVTDNGRIVGTQKEEVLPISGGQERVLRP 251
           E DP R+A + AE+KRY +D+ LLK++I++D V +NG ++  Q E V  +S   + ++RP
Sbjct: 189 EMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPLVRP 248

Query: 252 VIRLPERNAILTRINPEVRDTSVFVKLRPAWEDLRSYLTAKGRKRFEVYVCTMAERDYAL 311
           +IRL E+N ILTRINP +RDTSV V++RP+WE+LRSYLTAKGRKRFEVYVCTMAERDYAL
Sbjct: 249 LIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYAL 308

Query: 312 EMWRLLDPEANLISSHNLAERVVCVKSGSKKCLQNVFKDKGCHPKMAMVIDDRLQVWDEK 371
           EMWRLLDPE NLI++++L  R+VCVKSG KK L NVF D  CHPKMA+VIDDRL+VWDEK
Sbjct: 309 EMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDEK 368

Query: 372 DQPRVHVVPAYTPYYAPQAEMANAVPVLCVARNVACNVRGGFFREFDENLLRKVFELMYE 431
           DQPRVHVVPA+ PYY+PQAE A A PVLCVARNVAC VRGGFFR+FD++LL ++ E+ YE
Sbjct: 369 DQPRVHVVPAFAPYYSPQAEAA-ATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYE 427

Query: 432 NELLDLPYAPDVGDYLVCEDTNFAPN-NKDVAPIPEGMSGAEVGKRL 477
           N+  D+P  PDV  YLV ED     N NKD     +GM+  EV +RL
Sbjct: 428 NDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSF-DGMADTEVERRL 473




 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 34/211 (16%)

Query: 529 VLQEIGRLCESRVEFRSTVSSGKNMQFSVEVLFSNEKIGIGIGKTRDEAQVLAAEKALQN 588
           VL  I   C ++VE++ ++ S  +++FSVE   SN+KIG GIGK+R EA   AAE ++QN
Sbjct: 730 VLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQN 789

Query: 589 LESNYLSFMAPVAGVLNKDVNKPPGSGNGFLEDITLSEDISMEEPSGSTLKEQD------ 642
           L   Y+              N  PG  +      T +E+ISM   + + L  Q       
Sbjct: 790 LADGYMR------------ANGDPGPSHRDATPFT-NENISMG--NANALNNQPFARDET 834

Query: 643 ----HSKALD-------RLSSVISLIRELCL-EDQHVVFRDQVR-DSGSALNGEYHFQAE 689
                S+  D       R +  I+ +RELC  E   + F+ Q +  S      E H Q E
Sbjct: 835 ALPVSSRPTDPRLEGSMRHTGSITALRELCASEGLEMAFQSQRQLPSDMVHRDELHAQVE 894

Query: 690 LGGQILGRGIDLNKDFAKLQAAEEALKTLKT 720
           + G+++G G+    D A++QAAE AL ++++
Sbjct: 895 IDGRVVGEGVGSTWDEARMQAAERALSSVRS 925



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,392,167
Number of extensions: 729274
Number of successful extensions: 1782
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1774
Number of HSP's successfully gapped: 4
Length of query: 756
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 650
Effective length of database: 8,200,473
Effective search space: 5330307450
Effective search space used: 5330307450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)