BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0852400 Os01g0852400|Os01g0852400
(651 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0852400 Protein of unknown function DUF740 family protein 825 0.0
Os05g0450600 Protein of unknown function DUF740 family protein 408 e-114
>Os01g0852400 Protein of unknown function DUF740 family protein
Length = 651
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/651 (68%), Positives = 443/651 (68%)
Query: 1 MTTLQLDPPVVPARRSAATSCDLHPDETFTGFCTACLRERLAGLEXXXXXXXXPGRKSTS 60
MTTLQLDPPVVPARRSAATSCDLHPDETFTGFCTACLRERLAGLE PGRKSTS
Sbjct: 1 MTTLQLDPPVVPARRSAATSCDLHPDETFTGFCTACLRERLAGLEASAAAASAPGRKSTS 60
Query: 61 AIRSLFARPFXXXXXXXXXXXXXXXLPDLRRCKSFSCXXXXXXXXXXXXXXXXXXXXXXE 120
AIRSLFARPF LPDLRRCKSFSC E
Sbjct: 61 AIRSLFARPFGGGAGGSSVAGAGASLPDLRRCKSFSCGRGGDALAAAAAAAAAGTARADE 120
Query: 121 PQRRSCDVRGHSTLWSLFHQDDRGRVXXXXXXXXXXXXXXXXXXXXXXXXXXDDFLDEDI 180
PQRRSCDVRGHSTLWSLFHQDDRGRV DDFLDEDI
Sbjct: 121 PQRRSCDVRGHSTLWSLFHQDDRGRVPSSSSAADIAPPHQQPPPPPPRPFIPDDFLDEDI 180
Query: 181 PVVMEHXXXXXXXXXXXXXXTSGEIETEPNVVAREGKAMKDHMDFESSQPKKPPTKDLKE 240
PVVMEH TSGEIETEPNVVAREGKAMKDHMDFESSQPKKPPTKDLKE
Sbjct: 181 PVVMEHDEIMPVVEPVIVVDTSGEIETEPNVVAREGKAMKDHMDFESSQPKKPPTKDLKE 240
Query: 241 SFWVAASVFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLRRRRLRGEAGSE 300
SFWVAASVFS FLRRRRLRGEAGSE
Sbjct: 241 SFWVAASVFSKKWQKWRRKQKLKKEAAVSKAAAAAMPPPEKPSKPSFLRRRRLRGEAGSE 300
Query: 301 LAGGRRSCDTDPRFSLDAGRMSVDDAGFSWDEPRASWDGYLFGAGAGIGLGXXXXXXXXX 360
LAGGRRSCDTDPRFSLDAGRMSVDDAGFSWDEPRASWDGYLFGAGAGIGLG
Sbjct: 301 LAGGRRSCDTDPRFSLDAGRMSVDDAGFSWDEPRASWDGYLFGAGAGIGLGRAPPPLSRL 360
Query: 361 XXXXXVLEDTPATIVERSDGQIPVEDDADIDPPGGSLQTRDYYLDXXXXXXXXXXXXXXX 420
VLEDTPATIVERSDGQIPVEDDADIDPPGGSLQTRDYYLD
Sbjct: 361 PPMMSVLEDTPATIVERSDGQIPVEDDADIDPPGGSLQTRDYYLDSSTRRRRSLERSSSV 420
Query: 421 XXXXFEVTEPKPAPTTIANGKESPLGGSEFYHFHHAEDLLDRGFSSNSLIEDISASLEAA 480
FEVTEPKPAPTTIANGKESPLGGSEFYHFHHAEDLLDRGFSSNSLIEDISASLEAA
Sbjct: 421 RRPSFEVTEPKPAPTTIANGKESPLGGSEFYHFHHAEDLLDRGFSSNSLIEDISASLEAA 480
Query: 481 LSGPGSAKKPRRWRKAWSLWGFIHXXXXXXXXXXXXDIADRSFSEAWPDLRVRGYNPKMQ 540
LSGPGSAKKPRRWRKAWSLWGFIH DIADRSFSEAWPDLRVRGYNPKMQ
Sbjct: 481 LSGPGSAKKPRRWRKAWSLWGFIHRRASGRRSGGPSDIADRSFSEAWPDLRVRGYNPKMQ 540
Query: 541 RCXXXXXXXXXXXXXXXXXXXXXXXHVDVNGSSARRREEHVLERNRSARYSPPGRVDNGM 600
RC HVDVNGSSARRREEHVLERNRSARYSPPGRVDNGM
Sbjct: 541 RCNSNLSARSSFSSNSGGLGSSRRSHVDVNGSSARRREEHVLERNRSARYSPPGRVDNGM 600
Query: 601 LRFYLTPMRSXXXXXXXXXXXXXXXXXXXLPAKAGRQLTSQSFARSLLRMY 651
LRFYLTPMRS LPAKAGRQLTSQSFARSLLRMY
Sbjct: 601 LRFYLTPMRSGGGGGGARRGGGGGGGGGGLPAKAGRQLTSQSFARSLLRMY 651
>Os05g0450600 Protein of unknown function DUF740 family protein
Length = 471
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/468 (54%), Positives = 275/468 (58%), Gaps = 33/468 (7%)
Query: 201 TSGEIETEPNVVAREGKAMKDHMDFESSQPKKPPTKDLKE---SFWVAASVFSXXXXX-X 256
TSGE+ETE N RE KAMKDH+D E SQ KKP KDLKE SFW+AASVFS
Sbjct: 20 TSGEMETEANG-GREAKAMKDHIDLECSQAKKPQPKDLKEIAGSFWLAASVFSKKWQKWR 78
Query: 257 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLRRRRLRGEAGSELAGGRRSCDTDPRFSL 316
FLRR RLRGEA SE AGGRRSCDTDPRFSL
Sbjct: 79 RKQKLKKQDAAGSKAAAAAMPPPEKPSKPSFLRRSRLRGEACSEFAGGRRSCDTDPRFSL 138
Query: 317 DAGRMSVDDAGFSWDEPRASWDGYLFGAGAGIGLGXXXXXXXXXXXXXXVLEDTPATIVE 376
DAGRMSVDD GFSWDEPRASWDGYLFGAG GIGLG +ED+PA IVE
Sbjct: 139 DAGRMSVDDVGFSWDEPRASWDGYLFGAGTGIGLGRAPPPLSRLPPILSAMEDSPAGIVE 198
Query: 377 RSDGQIPVEDDA------DIDPPGGSLQTRDYY-LDXXXXXXXXXXXXXXXXXXXFEVTE 429
RSDGQIPVEDD+ D D PGGS+QTRDYY FEVT+
Sbjct: 199 RSDGQIPVEDDSQPEPDPDADTPGGSVQTRDYYDTSSSSRRRRSLERTSSVRRPSFEVTD 258
Query: 430 PK---PAPTTIANGKESPL-GGSEFYHFHHAEDLLDRG-FSSNSLIEDISASLEAALSGP 484
K PA I + K+SPL G SEFYHF HAEDLL+ FS++SLIED SL+AA GP
Sbjct: 259 AKPVLPAAAAITSVKDSPLIGSSEFYHFQHAEDLLEHHRFSTSSLIEDFPMSLDAAFPGP 318
Query: 485 GSAKKPRRWRKAWSLWGFIHXXXXXXXXXXXXDIADRSFSEAWPDLRVRGYNPKMQRCXX 544
KKPRRWRKAWSLWG IH D+ADR+FSE WP+LRVRG N +MQRC
Sbjct: 319 D--KKPRRWRKAWSLWGLIH-RRAAGRRGGASDVADRAFSEPWPELRVRGCNARMQRCNS 375
Query: 545 XXXXXXXXXXXXXXXXXXXXXHVDVNGSSA-RRREEHVLERNRSARYSPPGRVDNGMLRF 603
+VD NG+ RRREE LERNRSARYS PG DNGMLRF
Sbjct: 376 NASARSSFSSNSGGLGSSRRSYVDGNGNVVKRRREECALERNRSARYS-PGHADNGMLRF 434
Query: 604 YLTPMRSXXXXXXXXXXXXXXXXXXXLPAKAGRQLTSQSFARSLLRMY 651
YLTPMRS LPAK GRQL SQSFARS+LR+Y
Sbjct: 435 YLTPMRS-----------ASGRRAPGLPAKGGRQLRSQSFARSMLRLY 471
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,715,262
Number of extensions: 602947
Number of successful extensions: 1440
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1424
Number of HSP's successfully gapped: 3
Length of query: 651
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 544
Effective length of database: 11,448,903
Effective search space: 6228203232
Effective search space used: 6228203232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)