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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0852400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF740 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.35 (0.0496) R2 : 0.615
β1 : -2.37 (0.181) R2dD : 0.149 R2D : 0.0428
β2 : 1.11 (0.145) R2dC : 0.0645 R2C : 0.155
β3 : 3.28 (0.234) R2dE : 0.229 R2E : 0.346
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1 (0.108) R2dN8 : 0.107 R2N8 : 0.0921
σ : 0.923
deviance : 393.02
__
_____
C
peak time of C : 3.86
E
wheather : temperature
threshold : 24.4
memory length : 82
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.32
open length of G : 1.97

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
373.52 0.908 4.36 -2.44 1.02 3.3 -2.28 -1.14 -1.01 3.49 24.32 88 3.17 2.16
374.05 0.901 4.36 -2.41 1.02 3.36 -2.3 -- -1 3.47 24.36 87 3.2 2.06
388.77 0.918 4.35 -2.36 1.04 3.33 -- -1.24 -1.01 3.51 24.39 88 3.21 2.05
393.02 0.923 4.35 -2.37 1.11 3.28 -- -- -1 3.86 24.4 82 3.32 1.97
434.76 0.971 4.34 -2.33 -- 3.98 -- -1.5 -0.869 -- 24.4 82 3.2 2.15
547.84 1.1 4.41 -2.22 2.18 -- -1.26 -- -1.38 4.34 -- -- -- --
552.02 1.1 4.41 -2.21 2.18 -- -- -- -1.38 4.43 -- -- -- --
441.69 0.979 4.33 -2.37 -- 3.96 -- -- -0.877 -- 24.4 82 3.23 2.13
540.21 1.08 4.29 -- 1.1 3.21 -- -- -0.769 3.91 24.4 84 3.32 1.93
806.74 1.33 4.42 -2.12 -- -- -- -- -1.32 -- -- -- -- --
680.79 1.22 4.35 -- 2.14 -- -- -- -1.13 4.45 -- -- -- --
588.63 1.13 4.28 -- -- 3.65 -- -- -0.667 -- 24.3 82 3.2 2.2
925.84 1.42 4.37 -- -- -- -- -- -1.08 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 399.38 temperature 25.0 90 < th dose independent rect. 3 2
2 404.34 wind 3.0 10 < th dose dependent rect. 2 4
3 405.20 temperature 30.0 720 > th dose dependent rect. 18 1
19 408.02 temperature 25.0 90 < th dose independent rect. 2 4
40 411.30 humidity 90.0 90 > th dose dependent rect. 3 2
42 412.45 radiation 20.0 14400 < th dose independent rect. 3 3
45 412.90 temperature 25.0 270 < th dose independent rect. 1 2
59 416.20 wind 1.0 270 > th dose independent rect. 1 3
60 416.25 precipitation 0.1 10 < th dose independent rect. 2 4
61 416.25 precipitation 0.1 10 < th dose dependent rect. 2 4
65 417.03 wind 1.0 270 > th dose independent rect. 2 1
70 418.60 wind 5.0 10 < th dose independent rect. 2 4
71 418.64 humidity 50.0 1440 < th dose independent rect. 16 1
72 418.73 temperature 15.0 90 > th dose independent rect. 6 20
74 419.02 temperature 15.0 10 > th dose independent rect. 6 20
77 419.35 humidity 50.0 1440 < th dose dependent rect. 16 1
85 421.26 humidity 90.0 90 > th dose independent rect. 3 2
90 422.22 temperature 15.0 270 > th dose independent rect. 4 21
96 423.32 humidity 50.0 10 > th dose dependent rect. 2 4
98 423.56 wind 9.0 10 < th dose independent rect. 6 20
102 423.93 temperature 10.0 10 > th dose independent rect. 2 4
105 423.93 humidity 50.0 10 > th dose independent rect. 2 4
108 423.93 atmosphere 995.0 10 > th dose independent rect. 2 4
109 423.93 atmosphere 1010.0 10 < th dose independent rect. 2 4
111 423.93 radiation 20.0 10 < th dose independent rect. 2 4
123 425.11 precipitation 0.1 10 < th dose independent rect. 6 20
124 425.11 precipitation 0.1 10 < th dose dependent rect. 6 20
150 426.35 wind 9.0 1440 < th dose independent rect. 3 4
151 426.35 temperature 10.0 1440 > th dose independent rect. 3 4
154 426.35 temperature 30.0 1440 < th dose independent rect. 3 4
158 426.35 humidity 50.0 1440 > th dose independent rect. 3 4
163 426.35 atmosphere 995.0 1440 > th dose independent rect. 3 4
164 426.35 radiation 40.0 1440 < th dose independent rect. 3 4
168 426.35 temperature 10.0 1440 > th dose independent rect. 7 20
176 427.77 wind 1.0 90 < th dose independent rect. 4 1
195 428.96 atmosphere 995.0 10 > th dose independent rect. 6 20
199 429.40 radiation 40.0 30 < th dose dependent rect. 2 4
203 429.54 atmosphere 1015.0 1440 < th dose independent rect. 3 4
204 429.54 humidity 80.0 720 < th dose dependent rect. 20 1
233 430.60 temperature 10.0 10 > th dose dependent rect. 2 4
234 430.63 humidity 90.0 10 > th dose dependent rect. 2 4
266 431.82 humidity 70.0 720 > th dose independent rect. 19 7
276 432.55 temperature 30.0 720 > th dose independent rect. 18 1
311 432.97 wind 5.0 270 < th dose independent rect. 24 5
332 433.54 radiation 1.0 270 < th dose independent rect. 1 3
338 433.54 radiation 1.0 270 < th dose dependent rect. 1 3
348 434.11 humidity 90.0 10 > th dose independent rect. 3 3
351 434.33 humidity 70.0 720 < th dose independent rect. 19 1
364 434.42 humidity 90.0 90 > th dose independent rect. 2 5
384 435.49 atmosphere 1015.0 10 < th dose dependent rect. 2 4
386 435.61 temperature 30.0 10 < th dose dependent rect. 2 4
419 436.45 temperature 30.0 90 < th dose dependent rect. 3 2
432 436.91 humidity 90.0 90 > th dose dependent rect. 2 10
463 437.27 wind 9.0 270 < th dose independent rect. 4 21
469 437.67 precipitation 0.1 270 < th dose independent rect. 2 1
471 437.67 precipitation 0.1 270 < th dose dependent rect. 2 1
472 437.68 wind 1.0 270 > th dose independent rect. 4 21
481 438.05 temperature 10.0 270 > th dose independent rect. 2 1
484 438.05 humidity 50.0 270 > th dose independent rect. 2 1
487 438.05 atmosphere 995.0 270 > th dose independent rect. 2 1
488 438.05 atmosphere 1010.0 270 < th dose independent rect. 2 1
490 438.05 radiation 1.0 270 < th dose independent rect. 2 1
496 438.05 radiation 1.0 270 < th dose dependent rect. 2 1
501 438.06 atmosphere 1015.0 90 < th dose dependent rect. 3 2
512 438.45 radiation 1.0 270 < th dose dependent rect. 24 11
535 439.26 temperature 20.0 90 > th dose dependent rect. 3 2
537 439.28 humidity 90.0 10 > th dose dependent rect. 2 10
540 439.39 temperature 30.0 270 < th dose dependent rect. 1 3
615 440.37 precipitation 0.1 270 < th dose independent rect. 4 21
617 440.37 precipitation 0.1 270 < th dose dependent rect. 4 21
644 440.84 humidity 90.0 90 > th dose independent rect. 2 10
651 441.00 humidity 90.0 90 > th dose dependent rect. 2 19
707 442.25 temperature 10.0 10 > th dose dependent rect. 6 20
733 442.91 radiation 1.0 270 < th dose dependent rect. 24 7
745 443.21 atmosphere 995.0 10 > th dose dependent rect. 2 4
750 443.42 atmosphere 995.0 270 > th dose independent rect. 4 21
797 443.84 humidity 50.0 1440 > th dose independent rect. 16 1
840 444.39 temperature 30.0 1440 < th dose independent rect. 18 13
841 444.43 atmosphere 1005.0 10 > th dose independent rect. 2 4
849 444.59 atmosphere 1015.0 10 < th dose independent rect. 6 20
910 445.27 radiation 1.0 270 < th dose independent rect. 24 11
952 446.19 temperature 30.0 1440 < th dose independent rect. 18 11
998 446.79 radiation 1.0 90 < th dose independent rect. 2 9