BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0850000 Os01g0850000|AK105943
         (363 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0850000  Conserved hypothetical protein                      576   e-165
Os05g0453300  Conserved hypothetical protein                      289   3e-78
Os10g0433100                                                      128   8e-30

>Os01g0850000 Conserved hypothetical protein
          Length = 363

 Score =  576 bits (1485), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 293/363 (80%), Positives = 293/363 (80%)

Query: 1   MAEVCTPGAAEAELWLPDEFLDDDFFTXXXXXXXXXXXXXXXXXGLDGLARRMADLLAGE 60
           MAEVCTPGAAEAELWLPDEFLDDDFFT                 GLDGLARRMADLLAGE
Sbjct: 1   MAEVCTPGAAEAELWLPDEFLDDDFFTVEEKAAVAAKSESDEEDGLDGLARRMADLLAGE 60

Query: 61  GGKGTGSKVEVMAGSPQSTLCGLAASGEDSPNGGAXXXXXXXXXXXXXXXTDPWDVLSEA 120
           GGKGTGSKVEVMAGSPQSTLCGLAASGEDSPNGGA               TDPWDVLSEA
Sbjct: 61  GGKGTGSKVEVMAGSPQSTLCGLAASGEDSPNGGASQFSSPPSSPLEQPPTDPWDVLSEA 120

Query: 121 AGQVARLRMNSIPVPQKPHAHAGHGRFVPPARNPSPPVQAQKTAGAFQFAPNNNMLTQRQ 180
           AGQVARLRMNSIPVPQKPHAHAGHGRFVPPARNPSPPVQAQKTAGAFQFAPNNNMLTQRQ
Sbjct: 121 AGQVARLRMNSIPVPQKPHAHAGHGRFVPPARNPSPPVQAQKTAGAFQFAPNNNMLTQRQ 180

Query: 181 VQVAHFHXXXXXXXXXXXXXXXXXXXXXXXWGTHRAGVGVGAPLGLNSSGWPPLQKAHQQ 240
           VQVAHFH                       WGTHRAGVGVGAPLGLNSSGWPPLQKAHQQ
Sbjct: 181 VQVAHFHLLKQRQLLKQQREQQLAAAAAAAWGTHRAGVGVGAPLGLNSSGWPPLQKAHQQ 240

Query: 241 ASSAAGMRAVFLSPPGGKTERTGTGVFIPRQAGAPAEPKKKPSCSTVLLPARVVQALNLN 300
           ASSAAGMRAVFLSPPGGKTERTGTGVFIPRQAGAPAEPKKKPSCSTVLLPARVVQALNLN
Sbjct: 241 ASSAAGMRAVFLSPPGGKTERTGTGVFIPRQAGAPAEPKKKPSCSTVLLPARVVQALNLN 300

Query: 301 VDDLGARPCFPGGFVLDHDALVSRSNAMLTTQKRVQHXXXXXXXXXXXXXXXREVNLPQE 360
           VDDLGARPCFPGGFVLDHDALVSRSNAMLTTQKRVQH               REVNLPQE
Sbjct: 301 VDDLGARPCFPGGFVLDHDALVSRSNAMLTTQKRVQHHLHAATAAPPTLAAAREVNLPQE 360

Query: 361 WTY 363
           WTY
Sbjct: 361 WTY 363



>Os05g0453300 Conserved hypothetical protein
          Length = 368

 Score =  289 bits (739), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 170/341 (49%), Positives = 198/341 (58%), Gaps = 21/341 (6%)

Query: 13  ELWLPDEFLDDDFFTXXXXXXXXXXXXXXXXXG-LDGLARRMADLLAGEGGKGTGSKVEV 71
           E  LPDEFLDDDFF+                   L GL+RR+A LL  +G +    K EV
Sbjct: 11  EFLLPDEFLDDDFFSEEEKAAVAARSDSSDEEDCLAGLSRRLAGLLGDDGERDAPPKAEV 70

Query: 72  MAGSPQSTLCGLAASGEDSPNGGAXXXXXXXXXXXXXXXTDPWDVLSEAAGQVARLRM-N 130
             GSPQSTLCGL  SG++SPNGGA                DPWD+L EAAGQVAR+R+ N
Sbjct: 71  TVGSPQSTLCGLPKSGQESPNGGASQVSSPPSSPLEQKPADPWDMLYEAAGQVARMRVTN 130

Query: 131 SIPVPQKPHAHAGHGRFVPPARN----PSPPVQAQKTAGAFQFAPNNNMLTQRQVQVAHF 186
           SIPVP  P+    HG F  PAR     P     A K A A  + P   +LTQRQ+Q A F
Sbjct: 131 SIPVPNNPYGFPAHGGFAAPARKASPPPPVSPPATKVAPAAYYHPLAQLLTQRQIQAAQF 190

Query: 187 HXXXXXXXXXXXXXXXXXXXXXXXWGTHR------AGVGVGA-PLGLNSSGWPPLQKAHQ 239
           H                       WG  +      AG GV A P+ +N + WPPLQK   
Sbjct: 191 HLLKQQQLLKLQRDRHLAAAAA--WGARQTAAAKTAGCGVAASPVDMNPAAWPPLQKQQH 248

Query: 240 ------QASSAAGMRAVFLSPPGGKTERTGTGVFIPRQAGAPAEPKKKPSCSTVLLPARV 293
                       GMRAVFL+PPG K ER GTGVF+PR AGAPAEPK+K  CSTVL+PARV
Sbjct: 249 APAPGVGGGGGGGMRAVFLTPPGAKRERNGTGVFLPRPAGAPAEPKRKTGCSTVLVPARV 308

Query: 294 VQALNLNVDDLGARPCFPGGFVLDHDALVSRSNAMLTTQKR 334
           VQALNLN+DDLGA+P +PGGFVLDHDAL++RSNAML +QKR
Sbjct: 309 VQALNLNLDDLGAQPRYPGGFVLDHDALINRSNAMLASQKR 349



>Os10g0433100 
          Length = 213

 Score =  128 bits (321), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 67/77 (87%), Gaps = 2/77 (2%)

Query: 211 WGTHRAGVGVGAPLGLNSSGWPPLQKAHQQASSAAGMRAVFLSPPGGKTERTGTGVFIPR 270
           WGTHRAGVG   PLGLNSSGWPPLQK+HQQASSAAGMRAVFLSPPGGK ERTGTGVFIPR
Sbjct: 139 WGTHRAGVG--PPLGLNSSGWPPLQKSHQQASSAAGMRAVFLSPPGGKPERTGTGVFIPR 196

Query: 271 QAGAPAEPKKKPSCSTV 287
           Q GAP EPKKK S   +
Sbjct: 197 QGGAPTEPKKKLSAHLL 213



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,946,938
Number of extensions: 497743
Number of successful extensions: 1854
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1846
Number of HSP's successfully gapped: 3
Length of query: 363
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 261
Effective length of database: 11,709,973
Effective search space: 3056302953
Effective search space used: 3056302953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)