Os01g0850000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0850000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.84 | 0.46 | 12.3 | 0.0235 | 0.674 | -0.79 | -0.933 | 1 | -0.143 | 16.2 | 24.3 | 1304 | -- | -- |
| 97.09 | 0.459 | 12.2 | 0.377 | 0.671 | -0.672 | -0.824 | -- | -0.0279 | 16.1 | 23.9 | 1167 | -- | -- |
| 98.12 | 0.461 | 12.3 | 0.0363 | 0.672 | -0.792 | -- | 0.924 | -0.146 | 16.5 | 24.2 | 1335 | -- | -- |
| 99 | 0.463 | 12.2 | 0.362 | 0.654 | -0.69 | -- | -- | -0.0417 | 16.5 | 23.9 | 1316 | -- | -- |
| 113.19 | 0.498 | 12.2 | 0.344 | -- | -0.481 | -- | 0.755 | 0.0542 | -- | 25.75 | 431 | -- | -- |
| 117.9 | 0.509 | 12.2 | 0.643 | 0.585 | -- | -0.853 | -- | 0.254 | 16.5 | -- | -- | -- | -- |
| 119.75 | 0.512 | 12.2 | 0.636 | 0.585 | -- | -- | -- | 0.249 | 16.8 | -- | -- | -- | -- |
| 115.05 | 0.5 | 12.2 | 0.458 | -- | -0.565 | -- | -- | -0.014 | -- | 25.1 | 307 | -- | -- |
| 102.1 | 0.471 | 12.3 | -- | 0.654 | -0.765 | -- | -- | -0.107 | 16.5 | 23.93 | 1318 | -- | -- |
| 137.85 | 0.549 | 12.2 | 0.614 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 130.4 | 0.534 | 12.2 | -- | 0.573 | -- | -- | -- | 0.179 | 16.8 | -- | -- | -- | -- |
| 120.44 | 0.511 | 12.2 | -- | -- | -0.561 | -- | -- | -0.045 | -- | 24.2 | 201 | -- | -- |
| 147.78 | 0.567 | 12.2 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.11 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 2 | 87.86 | wind | 7 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 4 | 88.41 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 5 | 88.80 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 6 | 88.86 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 24 | 90.71 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 27 | 90.91 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 28 | 90.92 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 30 | 90.92 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 40 | 91.19 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 59 | 91.63 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 68 | 91.73 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 98 | 92.23 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 100 | 92.31 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 108 | 92.53 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 112 | 92.59 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 115 | 92.60 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 118 | 92.60 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 131 | 92.76 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 138 | 92.83 | radiation | 20 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 140 | 92.85 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 160 | 92.99 | radiation | 20 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 167 | 93.05 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 182 | 93.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 186 | 93.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 190 | 93.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 197 | 93.07 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 207 | 93.11 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 211 | 93.13 | radiation | 10 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 214 | 93.13 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 215 | 93.14 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 220 | 93.15 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 225 | 93.17 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 229 | 93.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 248 | 93.23 | radiation | 30 | 43200 | > th | dose dependent | rect. | 16 | 18 |
| 251 | 93.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 265 | 93.25 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 280 | 93.26 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 285 | 93.28 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 313 | 93.35 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 314 | 93.35 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 348 | 93.37 | radiation | 40 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 535 | 93.70 | wind | 5 | 14400 | > th | dose independent | sin | 22 | NA |
| 554 | 93.71 | radiation | 10 | 43200 | < th | dose independent | sin | 9 | NA |
| 579 | 93.75 | radiation | 20 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 584 | 93.76 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 612 | 93.81 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 618 | 93.83 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 619 | 93.83 | radiation | 40 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 642 | 93.90 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 647 | 93.92 | radiation | 20 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 678 | 93.95 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 701 | 93.99 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 731 | 94.01 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 18 |
| 738 | 94.02 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 912 | 94.21 | radiation | 30 | 43200 | > th | dose dependent | sin | 12 | NA |
| 926 | 94.23 | radiation | 10 | 43200 | < th | dose dependent | sin | 10 | NA |
| 954 | 94.26 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 967 | 94.28 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 20 |
| 970 | 94.29 | radiation | 40 | 43200 | < th | dose independent | sin | 11 | NA |
| 985 | 94.31 | wind | 5 | 14400 | < th | dose independent | sin | 22 | NA |
| 987 | 94.31 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 1 |