BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0850000 Os01g0850000|AK105943
(363 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59050.1 | chr5:23839494-23842519 REVERSE LENGTH=313 72 6e-13
AT4G02830.1 | chr4:1262447-1263932 FORWARD LENGTH=185 64 2e-10
AT3G54000.1 | chr3:19996757-19998197 FORWARD LENGTH=353 62 4e-10
>AT5G59050.1 | chr5:23839494-23842519 REVERSE LENGTH=313
Length = 312
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 238 HQQASSAAGMRAVFLSPPGGKTERTGTGVFIPRQAGAPAEPKKKPSCSTVLLPARVVQAL 297
HQ +G++AVF+ G +T GTGVF+PR G E +KK CSTV++PARVV+AL
Sbjct: 181 HQNQRPRSGVKAVFVDGSGSRTGSGGTGVFLPRGHGTVVESRKKSGCSTVIIPARVVEAL 240
Query: 298 NLNVDDLGARPCFPGGFVLDHDALV------SRSNAMLTTQKRVQHXXXXXXXXXXXXXX 351
++ D LG F HDAL+ + T+ RVQ
Sbjct: 241 KVHFDKLGVPSTFSSDIPPFHDALLVSMNNKKIKSNKNTSLSRVQSGSPYEMEMSAESHQ 300
Query: 352 XREVNLPQEWTY 363
+LPQEWTY
Sbjct: 301 EPPADLPQEWTY 312
>AT4G02830.1 | chr4:1262447-1263932 FORWARD LENGTH=185
Length = 184
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 239 QQASSAAGMRAVFLSPPGGKTERTGTGVFIPRQAGAPAEPKKKPSCSTVLLPARVVQALN 298
Q++ M+A FL PG T +GTGVF+P A P P KK +CS VLLP RVVQALN
Sbjct: 75 QRSKGEDRMQAFFLVTPGRTT--SGTGVFLPATASHP--PTKKTACSPVLLPTRVVQALN 130
Query: 299 LNVDDLGARPCFPGGFVLDHDALVSRSNAMLTTQKRVQHXXXXXXXXXXXXXXXREVNLP 358
LN+ + G P + ++D+ +S + TT +++ E LP
Sbjct: 131 LNIHNNGIH-ISPRPEIRENDS-KKKSEMLATTPIKIE---------AENPIDSPEKLLP 179
Query: 359 QEWTY 363
+EW Y
Sbjct: 180 EEWIY 184
>AT3G54000.1 | chr3:19996757-19998197 FORWARD LENGTH=353
Length = 352
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 223 PLGLNSSGWPPLQKAHQQASSAAGMRAVFLSPPGGKTERTGTGVFIPRQAG--APAEPKK 280
P+ L+SS W Q MRAVF+ GK TGTGVF+PR + E ++
Sbjct: 229 PVDLSSSAWS------NQFPRRDVMRAVFIGDHTGKRGSTGTGVFLPRSVNHTSRTETRE 282
Query: 281 KPSCSTVLLPARVVQALNLNV 301
KP+ STVL+PAR+ Q LNLN+
Sbjct: 283 KPTISTVLVPARLAQVLNLNL 303
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,714,308
Number of extensions: 245750
Number of successful extensions: 595
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 3
Length of query: 363
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,364,969
Effective search space: 2199986847
Effective search space used: 2199986847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)