BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0836400 Os01g0836400|AK073540
(914 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0836400 SAC3/GANP family protein 1565 0.0
Os05g0462600 SAC3/GANP family protein 698 0.0
>Os01g0836400 SAC3/GANP family protein
Length = 914
Score = 1565 bits (4052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/903 (85%), Positives = 775/903 (85%)
Query: 12 SDAKPTAGTGMEXXXXXXXXXXXXDHHLWSSSTGAPWNYSMNNSNQNTVYYDPQRDVSVP 71
SDAKPTAGTGME DHHLWSSSTGAPWNYSMNNSNQNTVYYDPQRDVSVP
Sbjct: 12 SDAKPTAGTGMEQPSPSPYQPSASDHHLWSSSTGAPWNYSMNNSNQNTVYYDPQRDVSVP 71
Query: 72 GSTENVTSGATHVVQSAMGITGATDSYAPYSNSVXXXXXXXXXXXXXXXXXXSTNEXXXX 131
GSTENVTSGATHVVQSAMGITGATDSYAPYSNSV STNE
Sbjct: 72 GSTENVTSGATHVVQSAMGITGATDSYAPYSNSVQPGYNAPQYPNYYYNCPQSTNESSVQ 131
Query: 132 XXXXXXXXAAYQPLTSFQNSGSYVGPTSNTYYNAGAHQTAPGYATSNNYYQSNSWTGGSS 191
AAYQPLTSFQNSGSYVGPTSNTYYNAGAHQTAPGYATSNNYYQSNSWTGGSS
Sbjct: 132 QGVDQSSGAAYQPLTSFQNSGSYVGPTSNTYYNAGAHQTAPGYATSNNYYQSNSWTGGSS 191
Query: 192 GDNHVQSYQSYTPSDTNAAQSSSSLPNNSYHYHQQYNQWPYYYDQXXXXXXXXXXXXXXX 251
GDNHVQSYQSYTPSDTNAAQSSSSLPNNSYHYHQQYNQWPYYYDQ
Sbjct: 192 GDNHVQSYQSYTPSDTNAAQSSSSLPNNSYHYHQQYNQWPYYYDQSAPSSGGPAVAVSSV 251
Query: 252 XXXXXXXXXXGYVYPSTQPPPPGTTWRSDAGATAVPPPQAPGTPVFQNQHVNQAAGPPGY 311
GYVYPSTQPPPPGTTWRSDAGATAVPPPQAPGTPVFQNQHVNQAAGPPGY
Sbjct: 252 SDANTASVSSGYVYPSTQPPPPGTTWRSDAGATAVPPPQAPGTPVFQNQHVNQAAGPPGY 311
Query: 312 QNQYVNQAPGTPGFQNQYVNQAPAVPGFQNQYANLAPTYQPGTTYYSQLPLSNQADQQKA 371
QNQYVNQAPGTPGFQNQYVNQAPAVPGFQNQYANLAPTYQPGTTYYSQLPLSNQADQQKA
Sbjct: 312 QNQYVNQAPGTPGFQNQYVNQAPAVPGFQNQYANLAPTYQPGTTYYSQLPLSNQADQQKA 371
Query: 372 SRWQGPIXXXXXXXXXXXXXQPTFQGSATSDALRVNKIQIPTNPRIAPTLPMAMPKVEKR 431
SRWQGPI QPTFQGSATSDALRVNKIQIPTNPRIAPTLPMAMPKVEKR
Sbjct: 372 SRWQGPISNVSSVNHVSESSQPTFQGSATSDALRVNKIQIPTNPRIAPTLPMAMPKVEKR 431
Query: 432 NLEADSSKKPAYVSVAVQKNDVKAAQDGHEAVTQGSIPVSLRTYVGRNVSRCKDDAQRSA 491
NLEADSSKKPAYVSVAVQKNDVKAAQDGHEAVTQGSIPVSLRTYVGRNVSRCKDDAQRSA
Sbjct: 432 NLEADSSKKPAYVSVAVQKNDVKAAQDGHEAVTQGSIPVSLRTYVGRNVSRCKDDAQRSA 491
Query: 492 VQNILKEIITKATADGILHTKNWDIEPLVPLPENITSTNLTSSAKDLXXXXXXXXXXXXX 551
VQNILKEIITKATADGILHTKNWDIEPLVPLPENITSTNLTSSAKDL
Sbjct: 492 VQNILKEIITKATADGILHTKNWDIEPLVPLPENITSTNLTSSAKDLSPFSFSTSRRSPS 551
Query: 552 XXXXXXWEPVVEEKVANKVELISKESAKTNTYNSSETTKRAGRSWDIGKFLQSRQAPLSQ 611
WEPVVEEKVANKVELISKESAKTNTYNSSETTKRAGRSWDIGKFLQSRQAPLSQ
Sbjct: 552 RRAKSRWEPVVEEKVANKVELISKESAKTNTYNSSETTKRAGRSWDIGKFLQSRQAPLSQ 611
Query: 612 YNQRPSKKKRIGGNSSLTENGNVSSDSDKEQDLTKYYANAITIANXXXXXXXXXXXXXXX 671
YNQRPSKKKRIGGNSSLTENGNVSSDSDKEQDLTKYYANAITIAN
Sbjct: 612 YNQRPSKKKRIGGNSSLTENGNVSSDSDKEQDLTKYYANAITIANSPEEKKRREHRSKRF 671
Query: 672 XXXXXXXXXXXXXXVPDKDGTSNTYARRSMPMLLSRSNGDDVSFAVEDLDWDALTVKGTC 731
VPDKDGTSNTYARRSMPMLLSRSNGDDVSFAVEDLDWDALTVKGTC
Sbjct: 672 ERSQGAASSKSRSSVPDKDGTSNTYARRSMPMLLSRSNGDDVSFAVEDLDWDALTVKGTC 731
Query: 732 QEIEKRYLRLTSAPDPATVRPEDVLEKALHMVETSQKNYLYKCDQLKSIRQDLTVQRIQN 791
QEIEKRYLRLTSAPDPATVRPEDVLEKALHMVETSQKNYLYKCDQLKSIRQDLTVQRIQN
Sbjct: 732 QEIEKRYLRLTSAPDPATVRPEDVLEKALHMVETSQKNYLYKCDQLKSIRQDLTVQRIQN 791
Query: 792 ELTVMVYETHARLALQSGDLPEFNQCQSQLKRLYAEGIKGCHFEFSAYNLLCVMLHSNNK 851
ELTVMVYETHARLALQSGDLPEFNQCQSQLKRLYAEGIKGCHFEFSAYNLLCVMLHSNNK
Sbjct: 792 ELTVMVYETHARLALQSGDLPEFNQCQSQLKRLYAEGIKGCHFEFSAYNLLCVMLHSNNK 851
Query: 852 RDLLSSMASLPKEAKQDRTVKHALAVHSAVSSGNYVLFFKLYKTAPDLNSCLMGKYDLPL 911
RDLLSSMASLPKEAKQDRTVKHALAVHSAVSSGNYVLFFKLYKTAPDLNSCLMGKYDLPL
Sbjct: 852 RDLLSSMASLPKEAKQDRTVKHALAVHSAVSSGNYVLFFKLYKTAPDLNSCLMGKYDLPL 911
Query: 912 SVI 914
SVI
Sbjct: 912 SVI 914
>Os05g0462600 SAC3/GANP family protein
Length = 835
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/740 (52%), Positives = 453/740 (61%), Gaps = 80/740 (10%)
Query: 169 QTAPGYATSNNYYQSNSWTGGSSGDNHVQSYQSYTPSDTNAAQSSSSLPNNSYHYHQQYN 228
QTAPGY TSN+YYQ+++W GGS +N+ QSYQ+Y S+TN Q S S+P NS+ Y QQYN
Sbjct: 78 QTAPGYGTSNSYYQNSTWNGGSFENNYAQSYQNYPSSNTNTVQHSISVPTNSFSYQQQYN 137
Query: 229 QWPYYYDQXXXXXXXXXXXXXXXXXXXXXXXXXGYVYPSTQPPPPGTTWRSDAGATAVPP 288
QWPYYY+ Y YPS QPPPPGTT ++++ P
Sbjct: 138 QWPYYYNHTVPNPAGDPVGNSNSIVNTTS----SYSYPSIQPPPPGTTSWKSNSSSSIAP 193
Query: 289 P-QAPGTPVFQNQHVNQAAGPPGYQNQYVNQAPGTPGFQNQYVNQAPAVPGFQNQYANLA 347
P QA G P Q+Q++NQA P +NQY Q G P QN Y +Q PA P NL
Sbjct: 194 PIQASGGPGPQDQYINQAHAPV-LENQYAGQVAGNPRSQNHYASQTPACP---QSTVNLN 249
Query: 348 PTYQPGTTYYSQLPLSNQADQQKASRWQGPIXXXXXXXXXXXXXQPTFQGSATSDALRVN 407
P Q SN DQQ
Sbjct: 250 PVQQ-----------SNHGDQQN------------------------------------- 261
Query: 408 KIQIPTNPRIAPTLPMAMPKVEKRNLEADSSKKPAYVSVAVQKNDVKAAQDGHEAVTQGS 467
T PRIAP M +PK EK+ L AD SKKPAYVSV++ KND + S
Sbjct: 262 -----TVPRIAPGFSMVIPKSEKKILGADLSKKPAYVSVSMVKNDAR------------S 304
Query: 468 IPVSLRTYVGRNVSRCKDDAQRSAVQNILKEIITKATADGILHTKNWDIEPLVPLPENIT 527
+P SL Y RN++ CKD+AQ++A Q++++EI A ADG L TKNWD EPL+PL +N+
Sbjct: 305 LPFSLHNYATRNLNCCKDEAQKAACQSMIEEIKNSAIADGTLLTKNWDTEPLLPLVQNVA 364
Query: 528 STNLTSSAKDLXXXXXXXXXXXXXXXXXXXWEPVVEEKVANKVELISKESAKTNTYNSSE 587
+ TS+ WEPVVEEKV +KVE + K T+N+ E
Sbjct: 365 TIPETSA----NNSSPSLSTSTNRRRQKSRWEPVVEEKVTDKVEPV-KGLVNGTTHNNLE 419
Query: 588 TTKRAGRSWDIGKFLQSRQAPLSQYNQRPSKKKRIGGNSSLTENGNVSSDSDKEQDLTKY 647
R +WD KF QS A ++ +QRP+KK++I S +NGN SSDSDKEQDLTKY
Sbjct: 420 AKNRMSNNWDSRKFFQSHHATANKVSQRPAKKQKISSYSDQMQNGNASSDSDKEQDLTKY 479
Query: 648 YANAITIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPDKDGTSNTYARRSMPMLLSR 707
YA+A +AN KD +N +ARR++ LL+R
Sbjct: 480 YASATALANSPEEKKRREHRSKRFEKNQNSSSKSRNSAA-SKDVMANIHARRAVSALLAR 538
Query: 708 SNGDDVSFAVEDLDWDALTVKGTCQEIEKRYLRLTSAPDPATVRPEDVLEKALHMVETSQ 767
S D + AVED+DWDALTVKGTCQEIEKRYLRLTSAPDPATVRPE VLEKAL MVETSQ
Sbjct: 539 SCEDGTTLAVEDMDWDALTVKGTCQEIEKRYLRLTSAPDPATVRPEHVLEKALSMVETSQ 598
Query: 768 KNYLYKCDQLKSIRQDLTVQRIQNELTVMVYETHARLALQSGDLPEFNQCQSQLKRLYAE 827
KNYLYKCDQLKSIRQDLTVQRIQNELTV VYETHARLA+Q+GDLPE+NQCQSQLKRLYAE
Sbjct: 599 KNYLYKCDQLKSIRQDLTVQRIQNELTVKVYETHARLAMQAGDLPEYNQCQSQLKRLYAE 658
Query: 828 GIKGCHFEFSAYNLLCVMLHSNNKRDLLSSMASLPKEAKQDRTVKHALAVHSAVSSGNYV 887
GIKGC+FEFSAYNLLCVMLHSNNKRDLLSS+A L K+AKQD VKHALAVHSAVSSGNYV
Sbjct: 659 GIKGCYFEFSAYNLLCVMLHSNNKRDLLSSLARLSKQAKQDEAVKHALAVHSAVSSGNYV 718
Query: 888 LFFKLYKTAPDLNSCLMGKY 907
LFFKLYK AP+LNSCLM Y
Sbjct: 719 LFFKLYKQAPNLNSCLMDLY 738
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.125 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,178,960
Number of extensions: 1136158
Number of successful extensions: 4336
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4315
Number of HSP's successfully gapped: 3
Length of query: 914
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 804
Effective length of database: 11,292,261
Effective search space: 9078977844
Effective search space used: 9078977844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 161 (66.6 bits)