Os05g0462600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAC3/GANP family protein.
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Os05g0462600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAC3/GANP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.66 | 0.321 | 9.86 | -1.14 | 0.274 | 0.752 | -0.617 | 1.12 | -0.131 | 12 | 28.88 | 412 | -- | -- |
| 47.28 | 0.32 | 9.84 | -0.984 | 0.282 | 0.852 | -0.672 | -- | -0.0894 | 12.6 | 28.9 | 417 | -- | -- |
| 48.3 | 0.324 | 9.86 | -1.17 | 0.28 | 0.734 | -- | 1.21 | -0.135 | 11.8 | 28.9 | 406 | -- | -- |
| 49.2 | 0.327 | 9.84 | -0.984 | 0.282 | 0.852 | -- | -- | -0.0894 | 12.1 | 28.9 | 417 | -- | -- |
| 52.06 | 0.336 | 9.87 | -1.2 | -- | 0.753 | -- | 1.35 | -0.145 | -- | 28.9 | 526 | -- | -- |
| 65.93 | 0.381 | 9.85 | -1.16 | 0.494 | -- | 0.131 | -- | -0.17 | 7.62 | -- | -- | -- | -- |
| 65.97 | 0.38 | 9.85 | -1.15 | 0.493 | -- | -- | -- | -0.17 | 7.72 | -- | -- | -- | -- |
| 52.96 | 0.339 | 9.85 | -1.02 | -- | 0.88 | -- | -- | -0.108 | -- | 29.2 | 539 | -- | -- |
| 75.35 | 0.404 | 9.81 | -- | 0.334 | 1.01 | -- | -- | 0.0292 | 13.4 | 28.9 | 415 | -- | -- |
| 79.07 | 0.416 | 9.86 | -1.15 | -- | -- | -- | -- | -0.163 | -- | -- | -- | -- | -- |
| 100.94 | 0.47 | 9.82 | -- | 0.484 | -- | -- | -- | -0.0419 | 7.88 | -- | -- | -- | -- |
| 79.31 | 0.415 | 9.82 | -- | -- | 0.993 | -- | -- | 0.0193 | -- | 28.84 | 582 | -- | -- |
| 113.69 | 0.498 | 9.83 | -- | -- | -- | -- | -- | -0.036 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 2 | 45.65 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 16 | 45.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 150 | 47.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 169 | 47.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 176 | 47.62 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 198 | 47.82 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 234 | 47.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 251 | 48.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 268 | 48.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 281 | 48.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 383 | 48.49 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 20 |
| 395 | 48.54 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 403 | 48.56 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 406 | 48.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 407 | 48.57 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 429 | 48.61 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 468 | 48.71 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 7 |
| 491 | 48.73 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 22 |
| 514 | 48.77 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 528 | 48.81 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 566 | 48.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 567 | 48.89 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 16 |
| 597 | 48.98 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 609 | 49.02 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 20 |
| 656 | 49.12 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 18 |
| 762 | 49.33 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 8 |
| 918 | 49.66 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 921 | 49.67 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 9 |
| 930 | 49.68 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 23 |
| 962 | 49.73 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 14 |
| 963 | 49.73 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 23 |
| 965 | 49.74 | temperature | 30 | 720 | < th | dose independent | sin | 21 | NA |