BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0462600 Os05g0462600|AK068785
(835 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39340.1 | chr2:16424043-16429771 FORWARD LENGTH=1007 538 e-153
AT3G06290.1 | chr3:1899123-1907297 REVERSE LENGTH=1698 60 7e-09
>AT2G39340.1 | chr2:16424043-16429771 FORWARD LENGTH=1007
Length = 1006
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 317/678 (46%), Positives = 399/678 (58%), Gaps = 41/678 (6%)
Query: 192 APPIQASGGPGPQDQYINQAHA-PVLENQYAG-QVAGNPRSQNHYAS--QTPACPQSTVN 247
AP +QA PQ+ Y + P+ E + G Q A P+ N +S Q P +
Sbjct: 336 APSLQAHHPVPPQNNYQSPLETKPLYETPFQGHQRATYPQEMNSQSSFHQAPLGYRQPTQ 395
Query: 248 LNPVQQSNHGD--QQNTVPRIAPGFSMVIPKSEKKILGADLSKKPAYVSVSMVK------ 299
P+ S Q T PRIA K +K A ++ PAYVSVSM K
Sbjct: 396 TAPLVDSQRVSKVQIPTNPRIASNLPSGFTKMDKDSTAASAAQAPAYVSVSMPKPKDHTT 455
Query: 300 --NDARSLPFSLHNYATRNLNCCKDEAQKAACQSMIEEIKNSAIADGTLLTKNWDTEPLL 357
+D + P SL + R CKD+ +K +C+ + +I A D TL T++WDTEPL
Sbjct: 456 AMSDPGTFPKSLRGFVERAFARCKDDKEKESCEVALRKIVKKAKEDNTLYTRDWDTEPLS 515
Query: 358 PLVQNVATIPEXXXXXXXXXXXXXXXXXXQKSRWEPVVEEKVTDKVEPVKGLVNGTTHNN 417
+ T KSRWEP+VE K V+P +
Sbjct: 516 TVTTTNVTN-SESSSAQLSSLQNKSPTRRPKSRWEPLVEGKPF--VKPASTFSSAVKFGV 572
Query: 418 LEAKNRMSNNWDSRKFFQ------------SHHATANKVSQRPAKKQKISSYSDQMQNGN 465
+N NN S + FQ S +A K QRP K+Q+ S + +
Sbjct: 573 WNHQNE--NNKKSSESFQKVDAATGFKPTYSGQNSAKKSFQRPVKRQRFSGGAATAIDDE 630
Query: 466 ASSDSDKEQDLTKYYASATALANSPXXXXXXXXXXXXXXXNQXXXXXXXXXXXXXDVMAN 525
ASSDSDK DLT YY+SA ALA S Q + N
Sbjct: 631 ASSDSDK--DLTPYYSSAMALAGSAEEKKRRDSRSKRFEKIQGHSRGNDLTKPKNANVGN 688
Query: 526 IHXXXXXXXXXXXXCEDGTTLAVEDMDWDALTVKGTCQEIEKRYLRLTSAPDPATVRPEH 585
+H ++ + AVED+DWDALTVKGTCQEIEKRYLRLTSAPDPATVRPE
Sbjct: 689 LHSRRATALRLSKVFDESGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPATVRPED 748
Query: 586 VLEKALSMVETSQKNYLYKCDQLKSIRQDLTVQRIQNELTVKVYETHARLAMQAGDLPEY 645
VLEKAL MV+ SQKNYL+KCDQLKSIRQDLTVQRI N LT KVYETHARLA++AGDLPEY
Sbjct: 749 VLEKALIMVQDSQKNYLFKCDQLKSIRQDLTVQRIHNHLTAKVYETHARLALEAGDLPEY 808
Query: 646 NQCQSQLKRLYAEGIKGCYFEFSAYNLLCVMLHSNNKRDLLSSLARLSKQAKQDEAVKHA 705
NQC SQLK LYAEG++GC EF+AY+LL + LHSNN R+LLSS++RLS++ K+DEAV+HA
Sbjct: 809 NQCLSQLKTLYAEGVEGCSLEFAAYSLLYITLHSNNNRELLSSMSRLSEEDKKDEAVRHA 868
Query: 706 LAVHSAVSSGNYVLFFKLYKQAPNLNSCLMDLYVERMRFEAVKCMSKSYRPTIPVGYVAQ 765
L+V +AV+SGNYV+FF+LYK APN+NSCLMDLYVE+MR++AV MS+S RPTIPV Y+ Q
Sbjct: 869 LSVRAAVTSGNYVMFFRLYKTAPNMNSCLMDLYVEKMRYKAVNFMSRSCRPTIPVSYIVQ 928
Query: 766 ILGFSRIDSEAS--------EECEMWLKAHGAILSIDNSRDLQLDTKASTTTLYMPEPEN 817
+LGF+ SE + E+C WLK HGA + D++ D+ LDTKA++T+L+MPEPE+
Sbjct: 929 VLGFTGAASEGTDEKETDGMEDCLEWLKTHGANIITDSNGDMLLDTKATSTSLFMPEPED 988
Query: 818 AVAHGDASLAVNDFLART 835
AVAHGD +L VNDF RT
Sbjct: 989 AVAHGDRNLDVNDFFTRT 1006
>AT3G06290.1 | chr3:1899123-1907297 REVERSE LENGTH=1698
Length = 1697
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 121/267 (45%), Gaps = 47/267 (17%)
Query: 567 KRYLRLTSAPDPATVRP----EHVLEKALSMVETS-QKNYL----YKCDQLKSIRQDLTV 617
K+Y R T+ + +RP ++ +E LS+++ +N+L + D++++IR DL +
Sbjct: 523 KKYTR-TAEREAILIRPMPILQNTMEYLLSLLDRPYNENFLGMYNFLWDRMRAIRMDLRM 581
Query: 618 QRIQNELTVKVYETHARLAMQA-GDLPEY-------------------NQCQSQLKRLYA 657
Q I N+ + + E RL + A +L EY N+ +L ++Y
Sbjct: 582 QHIFNQEAITLLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYD 641
Query: 658 EGIKGCYF-----EFSAY-NLLCVMLHSNNK---RDLLSSLARLSKQAKQDEAVKHALAV 708
+ K EF Y LL + H K +L LA ++ + +Q V A V
Sbjct: 642 DHRKKGITVPTEKEFRGYYALLKLDKHPGYKVEPSELSLDLANMTPEIRQTSEVLFARNV 701
Query: 709 HSAVSSGNYVLFFKLYKQAPNLNSCLMDLYVERMRFEAVKCMSKSYR--PTIPVGYVAQI 766
A +GN++ FF+L ++A L +CLM + ++R +A+ + + +PV ++
Sbjct: 702 ARACRTGNFIAFFRLARKASYLQACLMHAHFSKLRTQALASLHSGLQINQGLPVSDMSNW 761
Query: 767 LGFSRIDSEASEECEMWLKAHGAILSI 793
+G E+ E L+ HG + +
Sbjct: 762 IGMEE------EDIEALLEYHGFSIKV 782
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,622,158
Number of extensions: 589214
Number of successful extensions: 1675
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1669
Number of HSP's successfully gapped: 2
Length of query: 835
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 728
Effective length of database: 8,173,057
Effective search space: 5949985496
Effective search space used: 5949985496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 116 (49.3 bits)