Os01g0836400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAC3/GANP family protein.
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Os01g0836400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAC3/GANP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.2 | 0.283 | 11.1 | -0.353 | 0.944 | 0.207 | -0.331 | 1.91 | -0.18 | 22.8 | 30.04 | 1155 | -- | -- |
| 36.32 | 0.281 | 11.2 | -0.666 | 0.949 | 0.412 | -0.331 | -- | -0.183 | 22.8 | 30.97 | 1159 | -- | -- |
| 36.6 | 0.282 | 11.2 | -0.417 | 0.953 | 0.25 | -- | 1.4 | -0.185 | 22.8 | 31.18 | 1272 | -- | -- |
| 36.69 | 0.282 | 11.2 | -0.661 | 0.957 | 0.408 | -- | -- | -0.179 | 22.9 | 31.23 | 1278 | -- | -- |
| 81.63 | 0.421 | 11.1 | -0.388 | -- | 0.893 | -- | 0.926 | -0.195 | -- | 24.9 | 912 | -- | -- |
| 44.55 | 0.313 | 11.2 | -0.554 | 1 | -- | -0.212 | -- | -0.259 | 23 | -- | -- | -- | -- |
| 44.74 | 0.313 | 11.2 | -0.546 | 1 | -- | -- | -- | -0.259 | 23 | -- | -- | -- | -- |
| 78.71 | 0.413 | 11.2 | -0.779 | -- | 0.987 | -- | -- | -0.358 | -- | 24.4 | 922 | -- | -- |
| 47.26 | 0.32 | 11.2 | -- | 0.96 | 0.324 | -- | -- | -0.132 | 22.9 | 32.93 | 1208 | -- | -- |
| 107.03 | 0.483 | 11.2 | -0.523 | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
| 52.58 | 0.339 | 11.2 | -- | 0.996 | -- | -- | -- | -0.198 | 23 | -- | -- | -- | -- |
| 93.74 | 0.451 | 11.2 | -- | -- | 0.819 | -- | -- | -0.251 | -- | 24.6 | 908 | -- | -- |
| 114.25 | 0.499 | 11.2 | -- | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.13 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 2 | 34.18 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 3 | 34.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 14 | 34.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 18 | 34.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 31 | 34.89 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 45 | 34.93 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 13 |
| 85 | 35.37 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 94 | 35.63 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 106 | 35.63 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 119 | 35.71 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 7 |
| 120 | 35.71 | humidity | 60 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 125 | 35.74 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 167 | 35.88 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 177 | 36.00 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 223 | 36.13 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 5 |
| 235 | 36.20 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 240 | 36.23 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 299 | 36.34 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 316 | 36.39 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 326 | 36.41 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 368 | 36.47 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 412 | 36.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 414 | 36.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 438 | 36.52 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 493 | 36.58 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 562 | 36.66 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 571 | 36.67 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 597 | 36.70 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 16 |
| 600 | 36.70 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 602 | 36.71 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |
| 651 | 36.74 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 652 | 36.74 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 663 | 36.75 | temperature | 30 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 690 | 36.76 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 693 | 36.76 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 754 | 36.79 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 856 | 36.80 | wind | 5 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 913 | 36.84 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 939 | 36.85 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 940 | 36.85 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 941 | 36.85 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 943 | 36.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 957 | 36.86 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 960 | 36.86 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 974 | 36.87 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 996 | 36.88 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 7 |