BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0832200 Os01g0832200|AK068980
         (193 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0832200  Conserved hypothetical protein                      288   2e-78
Os05g0467300  SelT/selW/selH selenoprotein family protein          65   3e-11

>Os01g0832200 Conserved hypothetical protein
          Length = 193

 Score =  288 bits (736), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 143/193 (74%), Positives = 143/193 (74%)

Query: 1   MDRVQXXXXXXXXXXFCSDLVTLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDRVQ          FCSDLVTLFG                                   
Sbjct: 1   MDRVQLVLLGLPILLFCSDLVTLFGPEQLPTPQPDLPPHPSPDAASDAVQPDDIAADAAA 60

Query: 61  XXXXXEPQVDGPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGLEWFHLHGTTRSVLI 120
                EPQVDGPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGLEWFHLHGTTRSVLI
Sbjct: 61  SAQIAEPQVDGPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGLEWFHLHGTTRSVLI 120

Query: 121 DLEQWQQSGCLAISPSHFYKVLVPLKFTAMDNWFSQNYPNRDFPASLSYGSSLATGYQIL 180
           DLEQWQQSGCLAISPSHFYKVLVPLKFTAMDNWFSQNYPNRDFPASLSYGSSLATGYQIL
Sbjct: 121 DLEQWQQSGCLAISPSHFYKVLVPLKFTAMDNWFSQNYPNRDFPASLSYGSSLATGYQIL 180

Query: 181 NSGKIWKRFGHRC 193
           NSGKIWKRFGHRC
Sbjct: 181 NSGKIWKRFGHRC 193



>Os05g0467300 SelT/selW/selH selenoprotein family protein
          Length = 257

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 5/71 (7%)

Query: 66  EPQVDGPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGLEWFHLHGT----TRSVLID 121
           +  VDG   GTTVEL+FCASCSY+G A+T+K+MLETSFPG+    LH       + VL  
Sbjct: 91  QANVDGAGYGTTVELQFCASCSYKGTAMTMKRMLETSFPGIHVI-LHNYPPPFPKRVLGK 149

Query: 122 LEQWQQSGCLA 132
           L    Q G +A
Sbjct: 150 LVPILQVGAIA 160



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,195,908
Number of extensions: 181562
Number of successful extensions: 371
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)