Os01g0832200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0832200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.75 | 0.154 | 11.9 | 0.638 | 0.433 | -0.44 | 0.0425 | 1.26 | 0.346 | 2.91 | 25.43 | 1504 | -- | -- |
| 11.21 | 0.156 | 11.9 | 0.283 | 0.45 | -0.312 | 0.102 | -- | 0.313 | 3 | 24.9 | 7416 | -- | -- |
| 10.75 | 0.153 | 11.9 | 0.638 | 0.433 | -0.44 | -- | 1.26 | 0.346 | 2.91 | 25.43 | 1504 | -- | -- |
| 11.13 | 0.155 | 11.9 | 0.308 | 0.433 | -0.323 | -- | -- | 0.323 | 2.93 | 25.53 | 7515 | -- | -- |
| 17.06 | 0.193 | 11.9 | 0.434 | -- | -0.687 | -- | 1.49 | 0.31 | -- | 25.43 | 1504 | -- | -- |
| 15.39 | 0.184 | 11.9 | 0.184 | 0.424 | -- | 0.0117 | -- | 0.23 | 3.01 | -- | -- | -- | -- |
| 15.39 | 0.184 | 11.9 | 0.184 | 0.424 | -- | -- | -- | 0.23 | 3.01 | -- | -- | -- | -- |
| 17.94 | 0.198 | 11.9 | 0.277 | -- | -0.575 | -- | -- | 0.271 | -- | 25.39 | 1770 | -- | -- |
| 13.32 | 0.17 | 11.9 | -- | 0.429 | -0.256 | -- | -- | 0.266 | 2.97 | 27.06 | 7503 | -- | -- |
| 25.7 | 0.237 | 11.9 | 0.202 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 16.28 | 0.189 | 11.9 | -- | 0.428 | -- | -- | -- | 0.209 | 3.02 | -- | -- | -- | -- |
| 19.93 | 0.209 | 11.9 | -- | -- | -0.535 | -- | -- | 0.239 | -- | 25.39 | 1770 | -- | -- |
| 26.77 | 0.241 | 11.9 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.15 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 60 | 10.46 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 155 | 10.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 197 | 10.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 212 | 10.74 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 228 | 10.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 239 | 10.76 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 241 | 10.76 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 274 | 10.78 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 301 | 10.82 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 308 | 10.83 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 319 | 10.84 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 323 | 10.85 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 326 | 10.86 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 329 | 10.87 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 333 | 10.88 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 338 | 10.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 341 | 10.89 | humidity | 70.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 346 | 10.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 347 | 10.90 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 348 | 10.90 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 353 | 10.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 358 | 10.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 363 | 10.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 20 |
| 365 | 10.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 20 |
| 402 | 10.91 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 403 | 10.91 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 409 | 10.91 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 439 | 10.92 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 440 | 10.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 448 | 10.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 458 | 10.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 472 | 10.94 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 486 | 10.95 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 492 | 10.96 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 494 | 10.96 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 495 | 10.96 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 527 | 10.97 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 547 | 10.99 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 549 | 10.99 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 635 | 11.02 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 652 | 11.03 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 671 | 11.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 678 | 11.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 684 | 11.04 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 690 | 11.05 | humidity | 70.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 693 | 11.05 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 706 | 11.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 714 | 11.06 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 717 | 11.06 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 720 | 11.06 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 743 | 11.07 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 745 | 11.07 | wind | 3.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 773 | 11.08 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 783 | 11.08 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 816 | 11.09 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 819 | 11.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 15 |
| 820 | 11.09 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 850 | 11.10 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 851 | 11.10 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 857 | 11.10 | wind | 5.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 859 | 11.10 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 923 | 11.11 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 11 |
| 935 | 11.11 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 7 | 14 |
| 942 | 11.12 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 943 | 11.12 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 958 | 11.12 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 962 | 11.12 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 8 |