BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0832200 Os01g0832200|AK068980
         (193 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58640.1  | chr5:23697996-23699505 FORWARD LENGTH=229           58   4e-09
AT3G47300.1  | chr3:17428685-17429555 REVERSE LENGTH=210           54   6e-08

>AT5G58640.1 | chr5:23697996-23699505 FORWARD LENGTH=229
          Length = 228

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 75  GTTVELKFCASCSYRGNAVTVKKMLETSFPGLE 107
           G TVE+ FC SCSY+G AVT+KKMLET+FPGL+
Sbjct: 73  GNTVEINFCVSCSYKGTAVTMKKMLETAFPGLD 105



>AT3G47300.1 | chr3:17428685-17429555 REVERSE LENGTH=210
          Length = 209

 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 71  GPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGLE 107
           G   G TVE+ FC SCSY+G AV++KKMLE+ FPGL+
Sbjct: 52  GVGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLD 88



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,357,528
Number of extensions: 121314
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 100
Effective length of database: 8,556,881
Effective search space: 855688100
Effective search space used: 855688100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)