BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0820800 Os01g0820800|AK106944
(229 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0820800 Conserved hypothetical protein 300 7e-82
Os03g0696500 92 4e-19
Os03g0328200 Conserved hypothetical protein 91 6e-19
Os04g0322500 89 2e-18
Os03g0409700 87 1e-17
Os04g0316600 82 3e-16
Os01g0693600 Conserved hypothetical protein 65 3e-11
Os12g0614350 64 8e-11
>Os01g0820800 Conserved hypothetical protein
Length = 229
Score = 300 bits (767), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 150/189 (79%), Positives = 150/189 (79%)
Query: 41 ADLPPVRAVSRTLGLRSARPAPCGRGATAARANSSPYXXXXXXXXXXXXXXXXXXXXXXX 100
ADLPPVRAVSRTLGLRSARPAPCGRGATAARANSSPY
Sbjct: 41 ADLPPVRAVSRTLGLRSARPAPCGRGATAARANSSPYGGGRSAPAAGARGRGGGRGTQAT 100
Query: 101 XXXXXXXXXXXXXXXXVSEVNLDVDSDNVEDAAELQEIFQNHGKVKPDRANWTEDNTSLL 160
VSEVNLDVDSDNVEDAAELQEIFQNHGKVKPDRANWTEDNTSLL
Sbjct: 101 GARGRGGRRSTSTAATVSEVNLDVDSDNVEDAAELQEIFQNHGKVKPDRANWTEDNTSLL 160
Query: 161 CEIWVDQINKGNCVNGLMQKTGMREIIAAYHAATNLRHGRSQITNRIRQLKGLWQFIQTL 220
CEIWVDQINKGNCVNGLMQKTGMREIIAAYHAATNLRHGRSQITNRIRQLKGLWQFIQTL
Sbjct: 161 CEIWVDQINKGNCVNGLMQKTGMREIIAAYHAATNLRHGRSQITNRIRQLKGLWQFIQTL 220
Query: 221 RTNTGFNRI 229
RTNTGFNRI
Sbjct: 221 RTNTGFNRI 229
>Os03g0696500
Length = 312
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 51/81 (62%)
Query: 148 DRANWTEDNTSLLCEIWVDQINKGNCVNGLMQKTGMREIIAAYHAATNLRHGRSQITNRI 207
D ANWT +NT L CE++ QI+ GNC+ G M KTG +EI Y+AAT L H Q R
Sbjct: 109 DMANWTNENTKLFCELYCKQIDNGNCLRGSMTKTGWKEIRKGYYAATELVHDNEQFGFRY 168
Query: 208 RQLKGLWQFIQTLRTNTGFNR 228
R LK +W FIQ LRT+T R
Sbjct: 169 RGLKNMWTFIQKLRTDTRLGR 189
>Os03g0328200 Conserved hypothetical protein
Length = 527
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 56/101 (55%)
Query: 128 NVEDAAELQEIFQNHGKVKPDRANWTEDNTSLLCEIWVDQINKGNCVNGLMQKTGMREII 187
NV D A + V+ D+ANW+ NT C IW Q++ GNCV G+MQK G R+II
Sbjct: 169 NVSDLAAEHSDANDGIPVRKDKANWSARNTRTFCSIWCHQMDIGNCVRGIMQKNGWRDII 228
Query: 188 AAYHAATNLRHGRSQITNRIRQLKGLWQFIQTLRTNTGFNR 228
Y AT L H R Q R RQL+ W F LR+++G R
Sbjct: 229 KRYFQATGLVHNREQFMGRHRQLRKQWAFCNKLRSSSGLGR 269
>Os04g0322500
Length = 378
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%)
Query: 148 DRANWTEDNTSLLCEIWVDQINKGNCVNGLMQKTGMREIIAAYHAATNLRHGRSQITNRI 207
DRA+WT +NT L CE++ QI+ GNC+ G M K G +EI ++A T+L H Q R
Sbjct: 45 DRASWTNENTKLFCELYCKQIDNGNCIRGRMSKAGWKEIRKGFYATTDLVHDNEQFGFRY 104
Query: 208 RQLKGLWQFIQTLRTNTGFNR 228
R LK +W FI LRT+TG R
Sbjct: 105 RGLKNMWTFILRLRTDTGLGR 125
>Os03g0409700
Length = 535
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 55/101 (54%)
Query: 128 NVEDAAELQEIFQNHGKVKPDRANWTEDNTSLLCEIWVDQINKGNCVNGLMQKTGMREII 187
NV D A + V+ D+ANW+ NT C IW Q++ GN V G+MQK G R+II
Sbjct: 163 NVSDLAAEHSDANDGIPVRKDKANWSARNTRTFCSIWCHQMDIGNYVRGIMQKNGWRDII 222
Query: 188 AAYHAATNLRHGRSQITNRIRQLKGLWQFIQTLRTNTGFNR 228
Y AT L H R Q R RQL+ W F LR+++G R
Sbjct: 223 KRYFQATGLVHDREQFMGRHRQLRKQWAFCNKLRSSSGLGR 263
>Os04g0316600
Length = 508
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%)
Query: 149 RANWTEDNTSLLCEIWVDQINKGNCVNGLMQKTGMREIIAAYHAATNLRHGRSQITNRIR 208
RA WT +NT L CE++ QI+ GN + G M K G +EI ++A T+L H Q + R
Sbjct: 222 RATWTNENTKLFCELYCKQIDNGNYIRGSMSKAGWKEIRKGFYATTDLVHDNEQFGFKYR 281
Query: 209 QLKGLWQFIQTLRTNTGFNR 228
LK +W FI LRT+TG R
Sbjct: 282 GLKNMWTFILRLRTDTGLGR 301
>Os01g0693600 Conserved hypothetical protein
Length = 807
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 148 DRANWTEDNTSLLCEIWVDQINKGNCVNGLMQKTGMREIIAAYHAATNLRHGRSQITNRI 207
DRANWT+ N S+L + ++Q+ G+ M G I YHA T L H R Q+ N+I
Sbjct: 215 DRANWTDRNNSILLALCIEQVRAGHYNGSQMNSDGYNAIAEGYHAKTGLMHSRLQLKNQI 274
Query: 208 RQLKGLWQFIQTLRTNTGFNR 228
LK + F + L+T+TG R
Sbjct: 275 GILKSTYSFWRYLQTHTGLGR 295
>Os12g0614350
Length = 177
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 122 LDVDSDNVEDAAELQEI--FQNHGKVKPDRANWTEDNTSLLCEIWVDQINKGNCVNGLMQ 179
+D+D + D E++E+ F DRANWT+ S+L + ++Q+ G+ M
Sbjct: 33 VDLDEEGAWDD-EVEELGSFGGPPVSTSDRANWTDSYNSILLALCIEQVRAGHYNGSQMN 91
Query: 180 KTGMREIIAAYHAATNLRHGRSQITNRIRQLKGLWQFIQTLRTNTGFNR 228
G I YHA T L H R Q+ N+I LK + F + L+T+TG R
Sbjct: 92 SDGYNAIAEGYHAKTGLMHSRMQLKNQIGILKSTYSFWRYLQTHTGLGR 140
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,963,120
Number of extensions: 152051
Number of successful extensions: 565
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 9
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)