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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0328200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0386) R2 : 0.119
β1 : 0.446 (0.132) R2dD : 0.0265 R2D : -0.0512
β2 : -- (--) R2dC : -- R2C : --
β3 : 12.3 (1.63) R2dE : 3.55 R2E : -3.06
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 24.1 (3.44) R2dD*E : 3.06 R2D*E : -3.31
γ1 : 0.0709 (0.072) R2dN8 : 0.00251 R2N8 : -0.0421
σ : 0.626
deviance : 180.91
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.99
memory length : 136
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.632
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.63 0.617 2.98 0.358 0.368 10.6 1.17 20.6 0.0735 17.2 18.55 133 23.1 --
189.86 0.642 2.87 0.292 0.344 1.04 0.725 -- 0.109 17.3 19.87 140 1.34 --
173.44 0.613 3 0.402 0.375 12 -- 23.6 0.0913 18.4 18.11 133 0.186 --
190.49 0.643 2.87 0.277 0.377 1.35 -- -- 0.111 18 19.36 135 1.68 --
180.91 0.626 3.01 0.446 -- 12.3 -- 24.1 0.0709 -- 17.99 136 0.632 --
197.77 0.659 2.89 0.0873 0.311 -- 0.937 -- 0.0362 17.4 -- -- -- --
199.23 0.661 2.89 0.0829 0.338 -- -- -- 0.0395 18.6 -- -- -- --
197.65 0.655 2.87 0.234 -- 1.36 -- -- 0.0847 -- 19.04 135 1.79 --
192.24 0.646 2.88 -- 0.365 1.28 -- -- 0.0748 18 19.31 135 1.83 --
205.18 0.669 2.88 0.0748 -- -- -- -- 0.0326 -- -- -- -- --
199.41 0.661 2.89 -- 0.337 -- -- -- 0.0302 18.6 -- -- -- --
199.01 0.657 2.88 -- -- 1.24 -- -- 0.0526 -- 18.9 134 1.83 --
205.33 0.669 2.88 -- -- -- -- -- 0.0243 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.90 wind 3.0 90 > th dose dependent rect. 4 1
2 172.56 wind 3.0 90 > th dose independent rect. 4 1
5 180.11 temperature 25.0 90 < th dose dependent rect. 14 5
7 181.57 temperature 20.0 90 < th dose dependent rect. 4 1
16 182.66 humidity 70.0 90 > th dose independent rect. 14 5
17 182.66 atmosphere 1005.0 90 > th dose dependent rect. 14 5
20 182.90 temperature 20.0 90 < th dose dependent rect. 4 8
28 182.97 temperature 20.0 90 < th dose dependent rect. 4 17
32 183.06 humidity 70.0 90 > th dose independent rect. 14 17
52 183.87 temperature 25.0 270 < th dose independent rect. 15 2
58 184.06 temperature 25.0 10 < th dose dependent rect. 4 16
81 184.29 humidity 60.0 270 > th dose independent rect. 12 6
94 184.46 wind 7.0 30 > th dose independent rect. 17 3
106 184.64 temperature 25.0 270 < th dose independent rect. 14 4
109 184.68 humidity 90.0 30 < th dose independent rect. 5 1
125 184.86 temperature 20.0 90 < th dose dependent sin 0 NA
130 184.93 temperature 30.0 90 < th dose dependent rect. 14 17
146 185.13 atmosphere 1005.0 270 > th dose dependent rect. 15 1
153 185.18 temperature 20.0 10 < th dose dependent rect. 5 7
171 185.28 temperature 20.0 10 < th dose dependent rect. 6 1
193 185.37 humidity 60.0 270 > th dose independent rect. 15 1
204 185.46 wind 7.0 30 > th dose independent rect. 17 1
257 185.88 temperature 25.0 10 < th dose dependent sin 22 NA
274 185.95 temperature 30.0 270 < th dose independent rect. 1 17
304 186.06 temperature 25.0 10 < th dose dependent rect. 11 9
371 186.55 wind 5.0 90 > th dose dependent rect. 17 1
413 186.73 precipitation 0.1 10 > th dose independent rect. 17 3
434 186.73 precipitation 0.1 10 > th dose dependent rect. 17 3
466 186.78 temperature 30.0 270 < th dose independent rect. 23 20
492 186.93 humidity 50.0 30 > th dose dependent rect. 14 6
501 186.98 temperature 25.0 10 < th dose independent rect. 15 5
522 187.06 humidity 90.0 90 > th dose dependent rect. 20 3
536 187.11 atmosphere 1005.0 270 > th dose independent rect. 12 7
613 187.41 temperature 30.0 270 < th dose dependent rect. 1 18
616 187.41 temperature 30.0 90 < th dose dependent rect. 14 21
628 187.47 atmosphere 1005.0 90 > th dose independent rect. 14 7
640 187.53 humidity 60.0 270 > th dose independent rect. 1 17
688 187.70 temperature 30.0 90 < th dose independent rect. 14 17
740 187.85 temperature 30.0 10 < th dose dependent rect. 14 22
774 187.96 atmosphere 1005.0 90 < th dose independent rect. 20 1
781 187.99 humidity 50.0 270 > th dose dependent rect. 12 7
793 188.02 atmosphere 1005.0 90 < th dose independent rect. 19 3
858 188.18 radiation 10.0 43200 < th dose dependent rect. 21 6
901 188.26 temperature 10.0 270 > th dose dependent rect. 4 22
947 188.37 precipitation 0.1 10 < th dose independent sin 21 NA
950 188.37 precipitation 0.1 10 < th dose dependent sin 21 NA
978 188.43 wind 7.0 30 > th dose dependent rect. 17 3
996 188.45 temperature 25.0 10 < th dose dependent rect. 24 22