BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0818400 Os01g0818400|AK102788
         (267 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0818400  Homeodomain-like containing protein                 463   e-131
Os05g0564500  Homeodomain-like containing protein                  68   5e-12
Os05g0118700                                                       66   2e-11
Os01g0840300  Homeobox domain containing protein                   64   9e-11

>Os01g0818400 Homeodomain-like containing protein
          Length = 267

 Score =  463 bits (1191), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/267 (84%), Positives = 226/267 (84%)

Query: 1   MEWDKAKASSGEAVDDRXXXXXXXXYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALT 60
           MEWDKAKASSGEAVDDR        YVKVMTDEQMEVLRKQISIYATICEQLVEMHRALT
Sbjct: 1   MEWDKAKASSGEAVDDRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALT 60

Query: 61  AQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIK 120
           AQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIK
Sbjct: 61  AQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIK 120

Query: 121 DITAELSQHGQISETNVYNWFQNRRARSKRKQXXXXXXXXXXXXXXXXXSPTDKKPKSDR 180
           DITAELSQHGQISETNVYNWFQNRRARSKRKQ                 SPTDKKPKSDR
Sbjct: 121 DITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKKPKSDR 180

Query: 181 PLHQNIAMRDHNSERISEMHHFDTEHEQIRRMMYAXXXXXXXXXXXXXXXXFYDNVMSNP 240
           PLHQNIAMRDHNSERISEMHHFDTEHEQIRRMMYA                FYDNVMSNP
Sbjct: 181 PLHQNIAMRDHNSERISEMHHFDTEHEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSNP 240

Query: 241 RIDHFLGKVESPGSFPHMRSGESFDMY 267
           RIDHFLGKVESPGSFPHMRSGESFDMY
Sbjct: 241 RIDHFLGKVESPGSFPHMRSGESFDMY 267



>Os05g0564500 Homeodomain-like containing protein
          Length = 476

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 43/62 (69%)

Query: 90  RQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSK 149
           + RW P P Q++ILE IF+ G   P + +I+ I  +L ++GQ+ + NV+ WFQNR++R+K
Sbjct: 70  KPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKSRTK 129

Query: 150 RK 151
            K
Sbjct: 130 NK 131



>Os05g0118700 
          Length = 286

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 41/60 (68%)

Query: 92  RWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRK 151
           RW PTP QL +LE ++  G  TP+  +I+ ITA LS +G+I   NV+ WFQN +AR ++K
Sbjct: 27  RWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQK 86



>Os01g0840300 Homeobox domain containing protein
          Length = 313

 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 92  RWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRA 146
           RWTPT  Q+ +LE ++ QG  TP+ ++I+ ITA L +HG I   NV+ WFQN +A
Sbjct: 44  RWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKA 98



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,551,341
Number of extensions: 251297
Number of successful extensions: 535
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 9
Length of query: 267
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 168
Effective length of database: 11,866,615
Effective search space: 1993591320
Effective search space used: 1993591320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)