Os01g0818400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os01g0818400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.34 | 0.298 | 9.76 | 0.416 | 0.436 | 0.868 | 0.936 | 0.00917 | 0.0331 | 20.7 | 18.8 | 738 | -- | -- |
| 40.34 | 0.296 | 9.76 | 0.416 | 0.436 | 0.865 | 0.936 | -- | 0.0331 | 20.7 | 18.8 | 736 | -- | -- |
| 43.07 | 0.306 | 9.75 | 0.414 | 0.433 | 0.693 | -- | -0.573 | 0.0417 | 20.6 | 19.04 | 749 | -- | -- |
| 43.22 | 0.306 | 9.76 | 0.394 | 0.436 | 0.908 | -- | -- | 0.0358 | 20.7 | 18.81 | 742 | -- | -- |
| 53.36 | 0.34 | 9.74 | 0.385 | -- | 0.455 | -- | -0.872 | 0.0225 | -- | 18.63 | 717 | -- | -- |
| 44.91 | 0.314 | 9.77 | 0.274 | 0.404 | -- | 1.03 | -- | -0.019 | 20.5 | -- | -- | -- | -- |
| 48.27 | 0.325 | 9.77 | 0.242 | 0.404 | -- | -- | -- | -0.0184 | 20.3 | -- | -- | -- | -- |
| 53.73 | 0.341 | 9.75 | 0.358 | -- | 0.772 | -- | -- | 0.0203 | -- | 18.5 | 754 | -- | -- |
| 46.79 | 0.319 | 9.77 | -- | 0.422 | 0.687 | -- | -- | -0.0206 | 20.6 | 18.4 | 721 | -- | -- |
| 57.32 | 0.354 | 9.76 | 0.24 | -- | -- | -- | -- | -0.0227 | -- | -- | -- | -- | -- |
| 49.81 | 0.33 | 9.78 | -- | 0.403 | -- | -- | -- | -0.0454 | 20.4 | -- | -- | -- | -- |
| 56.69 | 0.351 | 9.76 | -- | -- | 0.604 | -- | -- | -0.0315 | -- | 17.9 | 656 | -- | -- |
| 58.84 | 0.358 | 9.77 | -- | -- | -- | -- | -- | -0.0493 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 3 | 35.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 4 | 35.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 54 | 36.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 76 | 36.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 4 |
| 89 | 36.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 104 | 36.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 138 | 37.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 158 | 37.27 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 196 | 37.42 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 209 | 37.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 219 | 37.53 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 238 | 37.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 283 | 37.76 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 453 | 38.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 575 | 38.56 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 11 |
| 771 | 38.97 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 866 | 39.17 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |