BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0812800 Os01g0812800|AK062929
         (112 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0812800  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family...   229   4e-61
Os05g0490100  Similar to 60S ribosomal protein L30                199   3e-52
Os01g0276000  Similar to 60S ribosomal protein L30                189   3e-49
AK062885                                                          144   1e-35

>Os01g0812800 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
          Length = 112

 Score =  229 bits (583), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MAPVKKTKKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEI 60
           MAPVKKTKKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEI
Sbjct: 1   MAPVKKTKKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEI 60

Query: 61  EYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPESH 112
           EYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPESH
Sbjct: 61  EYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPESH 112



>Os05g0490100 Similar to 60S ribosomal protein L30
          Length = 112

 Score =  199 bits (507), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 102/112 (91%)

Query: 1   MAPVKKTKKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEI 60
           MAP KK KK+ + INNKLQLVMKSGKYTLGYKTVLKTLRNSKGKL+I+ANNCPPLRKSEI
Sbjct: 1   MAPTKKAKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEI 60

Query: 61  EYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPESH 112
           EYYAMLGKVSV+HF+GNNVDLGTACGKYYRVCCLS++DPGDSDI    P S 
Sbjct: 61  EYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTPASQ 112



>Os01g0276000 Similar to 60S ribosomal protein L30
          Length = 111

 Score =  189 bits (481), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 99/110 (90%)

Query: 1   MAPVKKTKKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEI 60
           M   KKTKK+ + INNKLQLVMKSGKYTLGYKTVL+TLRNSK KLVI++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60

Query: 61  EYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPE 110
           EYYAML KV+V+HF+GNNVDLGTACGKY+RVCCLS++DPGDSDI K   E
Sbjct: 61  EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTGE 110



>AK062885 
          Length = 110

 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 84/110 (76%)

Query: 1   MAPVKKTKKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEI 60
           M   KKTKK  E IN++LQLVM+SGK  LGYK  +K+LR++K KLV++A N PPL KSE+
Sbjct: 1   MVASKKTKKTTENINSRLQLVMRSGKVALGYKQTMKSLRSTKAKLVLIAANTPPLVKSEV 60

Query: 61  EYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPE 110
           EYY+ML K  V+HF G+N DLGTACGKY+RV  ++++D GDSDI +   E
Sbjct: 61  EYYSMLAKTPVHHFAGSNNDLGTACGKYFRVGVMTILDAGDSDILRSASE 110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,636,634
Number of extensions: 123397
Number of successful extensions: 265
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)