Os01g0276000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L30.
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Os01g0276000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L30.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.59 | 0.344 | 13.2 | 0.285 | 0.599 | 0.541 | 0.428 | -1.33 | 0.0835 | 18.8 | 20.01 | 4208 | -- | -- |
| 55.31 | 0.346 | 13.1 | 0.455 | 0.598 | 0.865 | 0.421 | -- | 0.154 | 18.7 | 19.3 | 4175 | -- | -- |
| 53.37 | 0.34 | 13.2 | 0.311 | 0.602 | 0.508 | -- | -1.39 | 0.0827 | 18.8 | 20.5 | 2928 | -- | -- |
| 55.49 | 0.347 | 13.1 | 0.5 | 0.598 | 0.873 | -- | -- | 0.143 | 18.5 | 19.7 | 2949 | -- | -- |
| 72.27 | 0.396 | 13.2 | 0.303 | -- | 0.546 | -- | -1.22 | 0.0781 | -- | 20.5 | 3327 | -- | -- |
| 67.07 | 0.384 | 13.1 | 0.974 | 0.583 | -- | 0.556 | -- | 0.347 | 18.9 | -- | -- | -- | -- |
| 67.86 | 0.386 | 13.1 | 0.965 | 0.585 | -- | -- | -- | 0.349 | 18.8 | -- | -- | -- | -- |
| 73.86 | 0.4 | 13.1 | 0.51 | -- | 0.801 | -- | -- | 0.146 | -- | 19.7 | 3356 | -- | -- |
| 56.64 | 0.351 | 13.2 | -- | 0.578 | 1.09 | -- | -- | 0.0427 | 18.7 | 18.7 | 14497 | -- | -- |
| 85.76 | 0.433 | 13.1 | 0.952 | -- | -- | -- | -- | 0.337 | -- | -- | -- | -- | -- |
| 92.39 | 0.45 | 13.1 | -- | 0.574 | -- | -- | -- | 0.241 | 18.9 | -- | -- | -- | -- |
| 74.24 | 0.401 | 13.2 | -- | -- | 1.05 | -- | -- | 0.034 | -- | 18 | 21946 | -- | -- |
| 109.67 | 0.489 | 13.1 | -- | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.17 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 2 | 52.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 4 | 52.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 38 | 52.65 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 40 | 52.67 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 92 | 52.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 93 | 52.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 103 | 52.92 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 208 | 53.30 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 214 | 53.33 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 312 | 53.55 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 335 | 53.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 339 | 53.59 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 340 | 53.60 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 345 | 53.62 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 351 | 53.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 355 | 53.63 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 362 | 53.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 364 | 53.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 377 | 53.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 382 | 53.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 388 | 53.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 410 | 53.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 441 | 53.76 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 479 | 53.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 480 | 53.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 519 | 53.88 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 556 | 53.93 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 688 | 54.12 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 813 | 54.32 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 889 | 54.42 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 926 | 54.46 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 934 | 54.47 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 961 | 54.49 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 13 |