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Os01g0812800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0341) R2 : 0.489
β1 : -0.746 (0.125) R2dD : 0.0413 R2D : -0.0246
β2 : 1.18 (0.089) R2dC : 0.199 R2C : 0.183
β3 : 1.35 (0.117) R2dE : 0.15 R2E : 0.104
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.727 (0.0729) R2dN8 : 0.15 R2N8 : 0.0828
σ : 0.638
deviance : 187.52
__
_____
C
peak time of C : 18.4
E
wheather : radiation
threshold : 4.357
memory length : 70
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.46 0.624 10 -0.786 1.17 1.55 1.49 2.14 -0.739 18.5 10.89 71 -- --
183.4 0.631 10 -0.725 1.14 1.36 1.3 -- -0.719 18.2 7.059 70 -- --
181.13 0.627 10 -0.793 1.2 1.46 -- 2.3 -0.717 17.8 16.97 70 -- --
187.52 0.638 10 -0.746 1.18 1.35 -- -- -0.727 18.4 4.357 70 -- --
231.55 0.709 9.99 -0.699 -- 1.6 -- 1.91 -0.744 -- -0.0001494 289 -- --
208 0.676 9.98 -0.755 1.4 -- 1.17 -- -0.684 16.5 -- -- -- --
211.68 0.681 9.98 -0.746 1.41 -- -- -- -0.678 16.4 -- -- -- --
234.25 0.713 9.99 -0.838 -- 1.52 -- -- -0.817 -- -0.01048 365 -- --
202.11 0.662 9.98 -- 1.19 1.37 -- -- -0.646 18.4 3.57 70 -- --
318.42 0.834 9.97 -0.802 -- -- -- -- -0.715 -- -- -- -- --
226.34 0.704 9.96 -- 1.42 -- -- -- -0.595 16.4 -- -- -- --
252.47 0.74 9.97 -- -- 1.53 -- -- -0.708 -- -12.2 289 -- --
335.36 0.855 9.95 -- -- -- -- -- -0.626 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.31 radiation 40.0 10 < th dose independent rect. 4 16
3 166.35 radiation 40.0 10 < th dose independent rect. 6 14
4 166.78 radiation 40.0 90 < th dose independent rect. 3 16
7 167.93 temperature 10.0 90 > th dose dependent rect. 8 7
13 168.93 radiation 1.0 90 > th dose dependent rect. 8 7
16 169.64 radiation 40.0 90 < th dose dependent rect. 3 16
19 169.79 temperature 10.0 10 > th dose dependent rect. 9 6
28 170.41 radiation 1.0 10 > th dose dependent rect. 9 6
31 170.46 radiation 1.0 10 > th dose dependent rect. 9 9
32 170.46 radiation 40.0 10 < th dose dependent rect. 6 14
60 170.60 radiation 40.0 90 < th dose dependent rect. 6 13
61 170.67 radiation 1.0 90 > th dose dependent rect. 8 9
63 170.71 radiation 40.0 10 < th dose dependent rect. 4 16
128 172.23 radiation 40.0 90 < th dose dependent sin 2 NA
134 172.39 radiation 40.0 270 < th dose independent rect. 10 22
138 172.43 radiation 1.0 270 > th dose dependent sin 7 NA
146 172.62 radiation 40.0 90 < th dose dependent rect. 21 23
151 172.70 radiation 40.0 270 < th dose dependent sin 6 NA
153 172.80 radiation 1.0 90 > th dose dependent sin 2 NA
175 173.38 humidity 90.0 90 < th dose independent rect. 8 7
187 173.51 precipitation 0.1 90 < th dose independent rect. 8 7
188 173.51 precipitation 0.1 90 < th dose dependent rect. 8 7
198 173.71 wind 9.0 90 < th dose independent rect. 8 7
205 173.82 radiation 40.0 10 < th dose dependent sin 0 NA
210 173.91 temperature 10.0 270 > th dose dependent rect. 9 1
212 173.93 radiation 40.0 10 < th dose independent rect. 12 8
241 173.97 radiation 10.0 90 > th dose independent rect. 8 7
273 174.13 temperature 10.0 90 > th dose independent rect. 8 7
274 174.13 atmosphere 1015.0 90 < th dose independent rect. 8 7
275 174.13 temperature 10.0 90 > th dose independent rect. 15 17
278 174.16 humidity 80.0 10 < th dose independent rect. 9 6
290 174.30 radiation 40.0 10 < th dose independent rect. 12 21
292 174.33 radiation 40.0 90 < th dose independent rect. 13 19
297 174.39 radiation 40.0 90 < th dose independent rect. 15 17
299 174.43 atmosphere 995.0 90 > th dose independent rect. 8 7
305 174.49 temperature 10.0 270 > th dose dependent rect. 8 4
308 174.50 radiation 40.0 10 < th dose dependent rect. 12 8
309 174.51 radiation 40.0 90 < th dose dependent rect. 11 22
314 174.56 radiation 40.0 90 < th dose dependent rect. 13 20
318 174.63 radiation 40.0 10 < th dose independent rect. 21 23
349 174.80 radiation 40.0 10 < th dose dependent rect. 12 21
369 174.85 wind 9.0 90 < th dose independent rect. 15 17
372 174.88 wind 1.0 90 > th dose independent rect. 8 7
390 174.93 wind 1.0 10 > th dose independent rect. 9 6
391 174.94 radiation 40.0 10 < th dose dependent rect. 21 23
395 174.99 radiation 40.0 90 < th dose independent rect. 21 23
404 175.06 radiation 10.0 90 > th dose dependent rect. 16 23
440 175.32 radiation 1.0 10 > th dose independent rect. 9 6
472 175.40 wind 9.0 10 < th dose independent rect. 9 6
491 175.46 atmosphere 995.0 90 > th dose independent rect. 15 17
493 175.47 radiation 1.0 10 > th dose dependent sin 23 NA
504 175.56 radiation 20.0 270 > th dose independent rect. 8 4
524 175.64 temperature 10.0 10 > th dose independent rect. 9 6
526 175.64 atmosphere 995.0 10 > th dose independent rect. 9 6
527 175.64 atmosphere 1015.0 10 < th dose independent rect. 9 6
528 175.64 precipitation 0.1 10 < th dose independent rect. 9 6
529 175.64 temperature 10.0 10 > th dose independent rect. 15 18
530 175.64 precipitation 0.1 10 < th dose dependent rect. 9 6
558 175.73 wind 9.0 270 < th dose dependent rect. 7 6
632 176.20 radiation 40.0 10 < th dose independent rect. 13 23
636 176.22 radiation 40.0 10 < th dose independent rect. 15 18
654 176.25 temperature 10.0 1440 > th dose independent rect. 10 6
657 176.25 temperature 10.0 1440 > th dose independent rect. 16 18
676 176.37 wind 9.0 10 < th dose independent rect. 15 18
699 176.46 radiation 10.0 270 < th dose independent rect. 17 10
708 176.53 radiation 30.0 90 < th dose independent rect. 13 22
710 176.53 radiation 20.0 270 < th dose dependent rect. 17 10
716 176.57 precipitation 0.1 90 < th dose independent rect. 15 17
717 176.57 precipitation 0.1 90 < th dose dependent rect. 15 17
723 176.63 radiation 20.0 270 < th dose independent sin 7 NA
743 176.68 humidity 60.0 270 > th dose independent rect. 18 9
786 176.76 atmosphere 995.0 10 > th dose independent rect. 15 18
853 176.91 radiation 10.0 90 > th dose dependent no NA NA
977 176.97 humidity 50.0 90 > th dose independent rect. 8 7
990 177.03 atmosphere 1000.0 10 > th dose independent rect. 20 8