BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0812800 Os01g0812800|AK062929
         (112 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G36240.1  | chr1:13614890-13616233 FORWARD LENGTH=113          179   2e-46
AT1G77940.1  | chr1:29304116-29305288 REVERSE LENGTH=113          179   3e-46
AT3G18740.1  | chr3:6453437-6453870 FORWARD LENGTH=113            176   2e-45

>AT1G36240.1 | chr1:13614890-13616233 FORWARD LENGTH=113
          Length = 112

 Score =  179 bits (455), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 98/109 (89%)

Query: 1   MAPVKKTKKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEI 60
           M   KKTKK+ EGIN++L LVMKSGKYTLGYK+VLK+LR+SKGKL+++++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLP 109
           EYYAML KV V+H+N NNVDLGTACGKY+RV CLS+VDPGDSDI K LP
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109



>AT1G77940.1 | chr1:29304116-29305288 REVERSE LENGTH=113
          Length = 112

 Score =  179 bits (454), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 97/109 (88%)

Query: 1   MAPVKKTKKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEI 60
           M   KKTKK+ EGIN++L LVMKSGKYTLGYK+VLK+LR SKGKL++++ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLP 109
           EYYAML KV V+H+NGNNVDLGTACGKY+RV CLS+VDPGDSDI K +P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109



>AT3G18740.1 | chr3:6453437-6453870 FORWARD LENGTH=113
          Length = 112

 Score =  176 bits (446), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 97/109 (88%)

Query: 1   MAPVKKTKKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEI 60
           M   KK KK+ EGIN++L LVMKSGKYTLGYK+VLK+LR+SKGKL+++++NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLP 109
           EYYAML KV V+ +NGNNVDLGTACGKY+RV CLS+VDPGDSDI K LP
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,514,456
Number of extensions: 92885
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 3
Length of query: 112
Length of database: 11,106,569
Length adjustment: 81
Effective length of query: 31
Effective length of database: 8,885,873
Effective search space: 275462063
Effective search space used: 275462063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)