BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0806000 Os01g0806000|J053025L01
         (175 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0806000  Conserved hypothetical protein                      306   6e-84
Os01g0268800  UBA-like domain containing protein                   94   7e-20

>Os01g0806000 Conserved hypothetical protein
          Length = 175

 Score =  306 bits (783), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 159/175 (90%), Positives = 159/175 (90%)

Query: 1   PLGVPEAAGLWAPTRPLSFLPAIAAARLPAMSGGLPGFHNAPXXXXXXXXXXXXXXXXGF 60
           PLGVPEAAGLWAPTRPLSFLPAIAAARLPAMSGGLPGFHNAP                GF
Sbjct: 1   PLGVPEAAGLWAPTRPLSFLPAIAAARLPAMSGGLPGFHNAPVSRAVVVAAALFSVAFGF 60

Query: 61  RGRFLDLGLSYENVYGKLRIWKLITSLFAFSSTPELIFGAALLYYFRVFERQIGSNKYSV 120
           RGRFLDLGLSYENVYGKLRIWKLITSLFAFSSTPELIFGAALLYYFRVFERQIGSNKYSV
Sbjct: 61  RGRFLDLGLSYENVYGKLRIWKLITSLFAFSSTPELIFGAALLYYFRVFERQIGSNKYSV 120

Query: 121 FIVFSTAVSVLLQILSLAYLKGMILPLAFFTIYCPVKYCSNECPTLFIFSFIDNS 175
           FIVFSTAVSVLLQILSLAYLKGMILPLAFFTIYCPVKYCSNECPTLFIFSFIDNS
Sbjct: 121 FIVFSTAVSVLLQILSLAYLKGMILPLAFFTIYCPVKYCSNECPTLFIFSFIDNS 175



>Os01g0268800 UBA-like domain containing protein
          Length = 292

 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 57/95 (60%)

Query: 31  MSGGLPGFHNAPXXXXXXXXXXXXXXXXGFRGRFLDLGLSYENVYGKLRIWKLITSLFAF 90
           M GG+ GF NAP                  + R   L LS++ +    R+WKL  S FAF
Sbjct: 1   MQGGVSGFQNAPVTRAVVLASGLLSVVFSAQRRARALVLSHQGIVKNFRLWKLFASGFAF 60

Query: 91  SSTPELIFGAALLYYFRVFERQIGSNKYSVFIVFS 125
            STPEL+FG  LLYYFRVFERQIGSNKYSVF +F+
Sbjct: 61  QSTPELLFGVYLLYYFRVFERQIGSNKYSVFSLFT 95



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,277,713
Number of extensions: 186778
Number of successful extensions: 557
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 152 (63.2 bits)