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Os01g0268800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UBA-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0171) R2 : 0.00185
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.033 (0.0359) R2dN8 : 0.00238 R2N8 : 0.00185
σ : 0.321
deviance : 47.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.32 0.259 10.7 0.0111 0.494 0.325 0.322 0.505 -0.0622 9.5 20.06 300 -- --
30.89 0.261 10.8 -0.0353 0.451 0.231 0.285 -- -0.0725 9.54 20.06 300 -- --
30.59 0.258 10.7 0.012 0.486 0.309 -- 0.471 -0.0656 9.34 20.1 235 -- --
31.18 0.262 10.8 -0.0256 0.451 0.232 -- -- -0.0727 9.4 20.06 300 -- --
41.66 0.302 10.8 0.0755 -- 0.264 -- 0.424 -0.0765 -- 22.1 41 -- --
33.05 0.27 10.7 0.0249 0.484 -- 0.288 -- -0.0302 9.89 -- -- -- --
33.36 0.27 10.7 0.0354 0.484 -- -- -- -0.03 9.77 -- -- -- --
42.76 0.306 10.8 -0.051 -- 0.321 -- -- -0.0872 -- 20.19 41 -- --
31.2 0.262 10.8 -- 0.452 0.228 -- -- -0.0692 9.41 20.06 300 -- --
47.31 0.321 10.8 0.0307 -- -- -- -- -0.0296 -- -- -- -- --
33.39 0.27 10.7 -- 0.484 -- -- -- -0.034 9.76 -- -- -- --
42.82 0.306 10.8 -- -- 0.314 -- -- -0.0804 -- 20.19 41 -- --
47.34 0.321 10.8 -- -- -- -- -- -0.033 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.77 temperature 20.0 270 > th dose independent rect. 3 21
5 29.25 temperature 20.0 270 > th dose independent rect. 19 13
6 29.30 temperature 10.0 270 > th dose dependent rect. 20 12
11 29.37 temperature 20.0 90 > th dose independent rect. 5 13
14 29.44 temperature 10.0 10 > th dose dependent sin 6 NA
17 29.49 radiation 30.0 10 < th dose dependent sin 11 NA
18 29.53 temperature 30.0 10 < th dose dependent sin 7 NA
29 29.62 temperature 10.0 720 > th dose dependent rect. 5 2
33 29.65 temperature 20.0 720 > th dose independent rect. 20 4
38 29.68 temperature 25.0 90 < th dose independent rect. 1 8
39 29.68 temperature 30.0 10 < th dose dependent rect. 13 21
41 29.69 temperature 20.0 10 > th dose independent rect. 21 14
43 29.69 temperature 20.0 10 > th dose dependent rect. 21 14
45 29.70 temperature 30.0 10 < th dose dependent rect. 13 19
50 29.73 temperature 25.0 90 > th dose independent rect. 3 5
53 29.73 temperature 10.0 90 > th dose dependent rect. 5 21
56 29.74 temperature 25.0 10 > th dose dependent rect. 2 6
57 29.74 temperature 25.0 90 < th dose dependent rect. 1 9
59 29.75 temperature 25.0 10 < th dose independent rect. 13 19
60 29.75 temperature 25.0 90 < th dose independent rect. 12 20
65 29.75 temperature 15.0 10 > th dose dependent rect. 6 20
68 29.76 temperature 25.0 10 < th dose dependent sin 4 NA
71 29.77 temperature 25.0 10 < th dose independent rect. 24 10
77 29.77 temperature 25.0 10 < th dose dependent rect. 24 11
99 29.81 temperature 25.0 10 < th dose dependent rect. 24 15
135 29.86 wind 3.0 90 < th dose dependent rect. 5 8
137 29.86 temperature 20.0 90 < th dose dependent rect. 1 15
140 29.87 temperature 25.0 30 > th dose independent rect. 3 8
148 29.87 temperature 20.0 10 > th dose dependent rect. 23 12
149 29.87 temperature 30.0 10 < th dose dependent rect. 13 17
150 29.87 temperature 15.0 10 > th dose dependent rect. 6 18
172 29.90 temperature 10.0 30 > th dose dependent rect. 6 12
182 29.91 wind 3.0 90 < th dose dependent rect. 5 13
187 29.92 temperature 20.0 10 > th dose independent sin 4 NA
189 29.92 wind 9.0 720 < th dose independent rect. 7 23
195 29.92 radiation 10.0 10 < th dose dependent rect. 18 23
222 29.94 wind 3.0 90 < th dose dependent rect. 5 10
237 29.95 temperature 20.0 90 < th dose dependent rect. 1 20
245 29.96 temperature 20.0 10 > th dose independent rect. 5 23
265 29.97 radiation 10.0 30 < th dose dependent rect. 18 21
270 29.98 atmosphere 1005.0 30 > th dose independent rect. 18 12
283 29.99 temperature 15.0 720 > th dose independent rect. 5 2
285 29.99 temperature 20.0 10 > th dose independent rect. 21 12
304 30.01 temperature 25.0 90 < th dose independent rect. 15 17
323 30.02 temperature 20.0 10 > th dose dependent rect. 21 12
379 30.06 temperature 20.0 90 > th dose independent sin 4 NA
381 30.06 atmosphere 1005.0 30 > th dose independent rect. 16 14
383 30.06 temperature 20.0 270 > th dose independent rect. 12 23
394 30.07 atmosphere 1005.0 30 > th dose independent rect. 1 5
420 30.09 wind 7.0 720 < th dose independent rect. 17 2
422 30.09 temperature 25.0 90 < th dose independent rect. 17 15
434 30.10 wind 3.0 10 < th dose independent rect. 6 6
442 30.10 temperature 30.0 10 < th dose dependent rect. 18 12
471 30.12 wind 1.0 720 > th dose independent rect. 18 1
485 30.13 precipitation 0.1 720 < th dose independent rect. 18 1
488 30.13 precipitation 0.1 720 < th dose dependent rect. 18 1
501 30.14 wind 7.0 270 < th dose independent rect. 16 12
502 30.14 temperature 20.0 10 > th dose independent rect. 23 12
505 30.14 atmosphere 1005.0 30 > th dose independent rect. 14 16
508 30.14 temperature 20.0 270 > th dose independent rect. 19 23
514 30.14 radiation 20.0 720 < th dose dependent rect. 14 10
515 30.14 wind 9.0 10 < th dose dependent rect. 6 12
535 30.15 wind 9.0 4320 > th dose dependent rect. 15 6
539 30.15 radiation 40.0 720 < th dose dependent rect. 14 10
551 30.16 wind 5.0 90 < th dose independent rect. 18 11
564 30.16 wind 5.0 4320 > th dose dependent rect. 20 6
583 30.17 atmosphere 1005.0 30 > th dose independent rect. 11 19
584 30.17 temperature 20.0 270 < th dose independent rect. 24 22
602 30.18 wind 5.0 4320 < th dose independent rect. 20 1
607 30.18 temperature 30.0 270 < th dose independent rect. 10 22
613 30.18 temperature 30.0 10 < th dose dependent rect. 18 16
617 30.19 wind 3.0 90 < th dose independent rect. 5 6
626 30.19 radiation 40.0 720 < th dose independent rect. 13 18
628 30.19 atmosphere 1000.0 270 > th dose independent rect. 6 23
647 30.20 atmosphere 1005.0 270 > th dose independent rect. 23 6
659 30.20 radiation 10.0 90 < th dose dependent sin 10 NA
675 30.20 radiation 10.0 30 < th dose dependent rect. 18 16
687 30.21 temperature 20.0 720 > th dose independent rect. 20 20
693 30.21 wind 9.0 4320 > th dose dependent rect. 15 13
697 30.22 temperature 25.0 90 < th dose independent sin 8 NA
711 30.22 temperature 30.0 270 < th dose dependent rect. 9 1
745 30.23 humidity 50.0 270 > th dose dependent rect. 19 13
767 30.24 wind 3.0 4320 > th dose dependent rect. 20 1
802 30.25 atmosphere 1000.0 270 > th dose independent rect. 7 21
804 30.25 temperature 30.0 270 < th dose dependent rect. 8 3
826 30.26 temperature 20.0 10 < th dose independent rect. 24 16
827 30.26 temperature 20.0 270 < th dose independent rect. 20 17
829 30.26 wind 9.0 720 < th dose independent rect. 1 18
833 30.26 wind 1.0 270 > th dose independent rect. 7 21
837 30.26 wind 3.0 270 < th dose dependent rect. 5 2
839 30.26 temperature 15.0 30 > th dose dependent rect. 5 6
855 30.27 humidity 80.0 720 > th dose independent rect. 5 2
856 30.27 atmosphere 1005.0 270 > th dose independent rect. 1 2
857 30.27 humidity 70.0 720 > th dose independent rect. 19 5
859 30.27 wind 3.0 90 < th dose independent rect. 5 8
879 30.27 temperature 10.0 270 > th dose dependent rect. 3 21
885 30.28 wind 5.0 4320 > th dose independent rect. 20 1
887 30.28 wind 9.0 4320 < th dose independent rect. 17 4
889 30.28 temperature 30.0 4320 < th dose independent rect. 2 7
900 30.28 temperature 10.0 720 > th dose dependent rect. 20 4
901 30.28 temperature 30.0 270 < th dose dependent rect. 23 6
918 30.29 temperature 20.0 10 < th dose independent rect. 24 14
925 30.29 humidity 60.0 720 > th dose dependent rect. 5 2
948 30.30 temperature 30.0 4320 < th dose independent rect. 4 5
964 30.30 atmosphere 995.0 30 > th dose dependent rect. 18 12
982 30.31 temperature 20.0 10 < th dose independent sin 3 NA
985 30.31 wind 9.0 4320 > th dose independent rect. 17 4
990 30.31 temperature 20.0 270 < th dose independent rect. 23 15
997 30.31 humidity 50.0 720 > th dose independent rect. 12 19