BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0268800 Os01g0268800|AK105874
         (292 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56740.1  | chr3:21015631-21017883 FORWARD LENGTH=294          326   7e-90
AT2G41160.1  | chr2:17156314-17158687 REVERSE LENGTH=288          284   3e-77

>AT3G56740.1 | chr3:21015631-21017883 FORWARD LENGTH=294
          Length = 293

 Score =  326 bits (836), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 171/294 (58%), Positives = 203/294 (69%), Gaps = 3/294 (1%)

Query: 1   MQGGVSGFQNAPVTRXXXXXXXXXXXXXXXQRRARALVLSHQGIVKNFRLWKLFASGFAF 60
           M GG SGF NAPVT+               Q R+  L LS+Q I + FR+WKL  S FAF
Sbjct: 1   MNGGPSGFHNAPVTKAFVITSALFTVFFGIQGRSSKLGLSYQDIFEKFRIWKLIMSTFAF 60

Query: 61  QSTPELLFGVYLLYYFRVFERQIGSNKYSVFSLFTXXXXXXXXXXXXXXXKDTNYLSTLA 120
            STPEL+FG+YLLYYFRVFERQIGSNKYSVF LF+               KDT   + L 
Sbjct: 61  SSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSGTVSLLLEVILLSLLKDTT-ANLLT 119

Query: 121 CGPYGLIFASFIPFFLDIPVTSRFRIFGVNFSDKSFIYLAGLQLLLSSGKRSLIPGICGL 180
            GPYGLIFASFIPF+LDIPV++RFR+FGVNFSDKSFIYLAG+QLLLSS KRS+ PGICG+
Sbjct: 120 SGPYGLIFASFIPFYLDIPVSTRFRVFGVNFSDKSFIYLAGVQLLLSSWKRSIFPGICGI 179

Query: 181 IAGSLYRLNVLGIRRMKMPQVIASFFARIF--AXXXXXXXXXXXXLVGNMSSRTSRAVQN 238
           IAGSLYRLN+LGIR+ K P+ +ASFF+R+   +            +VG +S  T R  + 
Sbjct: 180 IAGSLYRLNILGIRKAKFPEFVASFFSRLSFPSFGNSPPPAPSRNIVGTISPNTGRRAER 239

Query: 239 NQPSGFAPVVEPPESSIAMLVSMGFDGNAARQALMRARNDINTATNILLEAQTR 292
           +QP+     VEP E +I  LVSMGFD NAARQAL+ ARND+N ATNILLEAQ+ 
Sbjct: 240 SQPAPLPSSVEPSEEAITTLVSMGFDRNAARQALVHARNDVNAATNILLEAQSH 293



>AT2G41160.1 | chr2:17156314-17158687 REVERSE LENGTH=288
          Length = 287

 Score =  284 bits (727), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/292 (52%), Positives = 184/292 (63%), Gaps = 5/292 (1%)

Query: 1   MQGGVSGFQNAPVTRXXXXXXXXXXXXXXXQRRARALVLSHQGIVKNFRLWKLFASGFAF 60
           M GG SGF NAPVT+               +  +  L LS+Q I + FR+WKL  S FAF
Sbjct: 1   MNGGPSGFNNAPVTKAFVIATALFTVFFGIRGGSSKLGLSYQDIFEKFRIWKLIISAFAF 60

Query: 61  QSTPELLFGVYLLYYFRVFERQIGSNKYSVFSLFTXXXXXXXXXXXXXXXKDTNYLSTLA 120
            ST +LL G+YLLY+FRVFERQIGSNKYSVF  F+               KD    + L 
Sbjct: 61  SSTTQLLSGLYLLYFFRVFERQIGSNKYSVFIFFSGFVSLILETILLSLTKDPT-ANLLT 119

Query: 121 CGPYGLIFASFIPFFLDIPVTSRFRIFGVNFSDKSFIYLAGLQLLLSSGKRSLIPGICGL 180
            GPY L+FASF+PFFLDIPVT RF + GV+FSDKSFIYLAG+QLLLSS KRS+  GICG+
Sbjct: 120 SGPYALVFASFVPFFLDIPVTKRFGVLGVHFSDKSFIYLAGVQLLLSSWKRSIFTGICGI 179

Query: 181 IAGSLYRLNVLGIRRMKMPQVIASFFARIFAXXXXXXXXXXXXLVGNMSSRTSRAVQNNQ 240
           IAGSLYRLN+ GIR+ K P+ +AS F+R                  N+  +  RA +   
Sbjct: 180 IAGSLYRLNIFGIRKAKFPEFMASLFSRFSLPSLSSHSQPPRRTSPNLGRQAVRAYRAPM 239

Query: 241 PSGFAPVVEPPESSIAMLVSMGFDGNAARQALMRARNDINTATNILLEAQTR 292
           PS      EP E +IA LVSMGFD NAARQAL+ ARND+N ATNILLEA + 
Sbjct: 240 PS----TTEPSEEAIATLVSMGFDQNAARQALVHARNDVNAATNILLEAHSH 287



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,877,937
Number of extensions: 162475
Number of successful extensions: 462
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)