BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0268800 Os01g0268800|AK105874
         (292 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0268800  UBA-like domain containing protein                  488   e-138
Os01g0806000  Conserved hypothetical protein                       87   2e-17

>Os01g0268800 UBA-like domain containing protein
          Length = 292

 Score =  488 bits (1256), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/292 (85%), Positives = 250/292 (85%)

Query: 1   MQGGVSGFQNAPVTRXXXXXXXXXXXXXXXQRRARALVLSHQGIVKNFRLWKLFASGFAF 60
           MQGGVSGFQNAPVTR               QRRARALVLSHQGIVKNFRLWKLFASGFAF
Sbjct: 1   MQGGVSGFQNAPVTRAVVLASGLLSVVFSAQRRARALVLSHQGIVKNFRLWKLFASGFAF 60

Query: 61  QSTPELLFGVYLLYYFRVFERQIGSNKYSVFSLFTXXXXXXXXXXXXXXXKDTNYLSTLA 120
           QSTPELLFGVYLLYYFRVFERQIGSNKYSVFSLFT               KDTNYLSTLA
Sbjct: 61  QSTPELLFGVYLLYYFRVFERQIGSNKYSVFSLFTISVSLLLEILSLVLLKDTNYLSTLA 120

Query: 121 CGPYGLIFASFIPFFLDIPVTSRFRIFGVNFSDKSFIYLAGLQLLLSSGKRSLIPGICGL 180
           CGPYGLIFASFIPFFLDIPVTSRFRIFGVNFSDKSFIYLAGLQLLLSSGKRSLIPGICGL
Sbjct: 121 CGPYGLIFASFIPFFLDIPVTSRFRIFGVNFSDKSFIYLAGLQLLLSSGKRSLIPGICGL 180

Query: 181 IAGSLYRLNVLGIRRMKMPQVIASFFARIFAXXXXXXXXXXXXLVGNMSSRTSRAVQNNQ 240
           IAGSLYRLNVLGIRRMKMPQVIASFFARIFA            LVGNMSSRTSRAVQNNQ
Sbjct: 181 IAGSLYRLNVLGIRRMKMPQVIASFFARIFAPSSGGSSRPSRSLVGNMSSRTSRAVQNNQ 240

Query: 241 PSGFAPVVEPPESSIAMLVSMGFDGNAARQALMRARNDINTATNILLEAQTR 292
           PSGFAPVVEPPESSIAMLVSMGFDGNAARQALMRARNDINTATNILLEAQTR
Sbjct: 241 PSGFAPVVEPPESSIAMLVSMGFDGNAARQALMRARNDINTATNILLEAQTR 292



>Os01g0806000 Conserved hypothetical protein
          Length = 175

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 60/95 (63%)

Query: 1   MQGGVSGFQNAPVTRXXXXXXXXXXXXXXXQRRARALVLSHQGIVKNFRLWKLFASGFAF 60
           M GG+ GF NAPV+R               + R   L LS++ +    R+WKL  S FAF
Sbjct: 31  MSGGLPGFHNAPVSRAVVVAAALFSVAFGFRGRFLDLGLSYENVYGKLRIWKLITSLFAF 90

Query: 61  QSTPELLFGVYLLYYFRVFERQIGSNKYSVFSLFT 95
            STPEL+FG  LLYYFRVFERQIGSNKYSVF +F+
Sbjct: 91  SSTPELIFGAALLYYFRVFERQIGSNKYSVFIVFS 125



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,329,357
Number of extensions: 230432
Number of successful extensions: 607
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)