BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0794100 Os01g0794100|AK062404
         (114 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0794100  Conserved hypothetical protein                      216   3e-57
Os01g0793800  Conserved hypothetical protein                       99   9e-22

>Os01g0794100 Conserved hypothetical protein
          Length = 114

 Score =  216 bits (549), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/114 (92%), Positives = 105/114 (92%)

Query: 1   MGNCAVTQHAVSWADDGEWELPESGEEGTAPPRSGAHMTEVTIRITKRQLQELVDKRXXX 60
           MGNCAVTQHAVSWADDGEWELPESGEEGTAPPRSGAHMTEVTIRITKRQLQELVDKR   
Sbjct: 1   MGNCAVTQHAVSWADDGEWELPESGEEGTAPPRSGAHMTEVTIRITKRQLQELVDKRAAA 60

Query: 61  XXXXXXYHVYRKSRRSAAELLADIMNAGEVYHQHYRVAHWKPALQSIPEAAMES 114
                 YHVYRKSRRSAAELLADIMNAGEVYHQHYRVAHWKPALQSIPEAAMES
Sbjct: 61  AGGGHGYHVYRKSRRSAAELLADIMNAGEVYHQHYRVAHWKPALQSIPEAAMES 114



>Os01g0793800 Conserved hypothetical protein
          Length = 112

 Score = 98.6 bits (244), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 70/115 (60%), Gaps = 11/115 (9%)

Query: 1   MGNCAVTQHAV-SWADDGEWE---LPESGEEGTAPPRSGAHMTEVTIRITKRQLQELVDK 56
           MGNC  +Q AV SWAD  EWE      S  E         H+ EVTIRITKRQL EL+++
Sbjct: 1   MGNCGASQRAVESWADGDEWEDEAAASSSSEDDGHRERMEHVAEVTIRITKRQLHELMER 60

Query: 57  RXXXXXXXXXYHVYRKSRRSAAELLADIMNAGEVYHQ-HYRVAHWKPALQSIPEA 110
           +             + SRRS  +LLADIMN+GEV+H   +R AHWKPALQSIPEA
Sbjct: 61  KGAGNGHG------KISRRSTQQLLADIMNSGEVHHHDQHREAHWKPALQSIPEA 109



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.127    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,931,356
Number of extensions: 125639
Number of successful extensions: 440
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 3
Length of query: 114
Length of database: 17,035,801
Length adjustment: 81
Effective length of query: 33
Effective length of database: 12,806,467
Effective search space: 422613411
Effective search space used: 422613411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)