BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0784000 Os01g0784000|AK062753
         (109 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0621200                                                      227   1e-60
Os01g0784000  Hypothetical protein                                225   5e-60
Os07g0183800                                                      219   4e-58
Os07g0675300                                                      100   2e-22
Os05g0341001                                                       73   4e-14

>Os11g0621200 
          Length = 331

 Score =  227 bits (578), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLW 60
           NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLW
Sbjct: 223 NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLW 282

Query: 61  KARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS 109
           KARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS
Sbjct: 283 KARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS 331



>Os01g0784000 Hypothetical protein
          Length = 109

 Score =  225 bits (574), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLW 60
           NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLW
Sbjct: 1   NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLW 60

Query: 61  KARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS 109
           KARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS
Sbjct: 61  KARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS 109



>Os07g0183800 
          Length = 398

 Score =  219 bits (558), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/109 (96%), Positives = 108/109 (99%)

Query: 1   NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLW 60
           NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPG PACFAACSHGLW
Sbjct: 290 NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGCPACFAACSHGLW 349

Query: 61  KARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS 109
           KARNQL+FKLTETSVAYILH+IRESLQLWVHRLKPSLREH+NTWADKLS
Sbjct: 350 KARNQLVFKLTETSVAYILHQIRESLQLWVHRLKPSLREHINTWADKLS 398



>Os07g0675300 
          Length = 373

 Score =  100 bits (250), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/79 (55%), Positives = 57/79 (72%), Gaps = 3/79 (3%)

Query: 2   HIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLWK 61
           HIILRCKLA  +W+KLNL   A +S+N+  FVE ++ + P H +PGWP CFAAC+HGLWK
Sbjct: 295 HIILRCKLADGIWRKLNLLNQARQSANLLQFVEQVMTSSPPHSQPGWPVCFAACTHGLWK 354

Query: 62  ARNQLIFK---LTETSVAY 77
           ARN   F+   LTE ++ Y
Sbjct: 355 ARNLRTFQEKLLTEATLLY 373



>Os05g0341001 
          Length = 535

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 1/109 (0%)

Query: 1   NHIILRCKLAGEVWKKLNLYETAVRSSNIQDFVESILDTLPEHQKPGWPACFAACSHGLW 60
           +HI+LRCK A  +W+KLNL + A  S +   F+++I+D+     K   P  FAAC++ LW
Sbjct: 428 DHILLRCKNANNLWEKLNLLQLANNSESSSAFLQAIIDS-NRSSKGIEPIWFAACAYTLW 486

Query: 61  KARNQLIFKLTETSVAYILHRIRESLQLWVHRLKPSLREHLNTWADKLS 109
           K+RN  +F+    ++ +I  ++ ++L LW  R   S  + + +W  +LS
Sbjct: 487 KSRNNRVFEGQLDNLQHITQQVSDTLDLWSMRTNESNWQKIQSWCTRLS 535



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.134    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,719,135
Number of extensions: 116746
Number of successful extensions: 450
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 5
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)