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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0621200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.63 (0.0381) R2 : 0.259
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.19 (0.0988) R2dC : 0.238 R2C : 0.236
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.267 (0.0803) R2dN8 : 0.0233 R2N8 : 0.0211
σ : 0.72
deviance : 236.66
__
_____
C
peak time of C : 16.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.37 0.681 5.53 1.19 1.31 -0.991 -1.22 2.5 0.0629 17.2 10.57 769 -- --
214.73 0.682 5.58 0.748 1.15 -0.88 -1.16 -- -0.0539 16.9 12.17 1147 -- --
211.58 0.677 5.51 1.34 1.15 -0.916 -- 2.8 0.0964 17 5.469 1151 -- --
218.15 0.688 5.59 0.745 1.16 -0.895 -- -- -0.0606 17.1 14.01 1092 -- --
279.83 0.779 5.49 1.35 -- -1.16 -- 2.67 0.108 -- 10.7 1204 -- --
226.88 0.706 5.62 0.493 1.21 -- -1.16 -- -0.207 16.6 -- -- -- --
230.44 0.711 5.62 0.486 1.2 -- -- -- -0.213 16.7 -- -- -- --
285.85 0.787 5.56 0.783 -- -1.12 -- -- -0.0432 -- 14.08 1215 -- --
230.93 0.708 5.61 -- 1.19 -0.584 -- -- -0.185 17 14.2 946 -- --
307.38 0.819 5.61 0.44 -- -- -- -- -0.245 -- -- -- -- --
236.66 0.72 5.63 -- 1.19 -- -- -- -0.267 16.7 -- -- -- --
299.99 0.807 5.59 -- -- -0.802 -- -- -0.177 -- 12.53 1202 -- --
312.48 0.825 5.62 -- -- -- -- -- -0.293 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.66 temperature 10.0 270 > th dose dependent rect. 12 9
8 201.94 temperature 10.0 270 > th dose dependent rect. 12 20
16 203.22 temperature 10.0 270 > th dose dependent rect. 2 18
18 203.50 temperature 15.0 270 > th dose independent rect. 11 10
19 203.54 temperature 10.0 10 > th dose dependent rect. 15 18
45 204.44 temperature 15.0 90 > th dose independent rect. 15 17
54 204.73 humidity 60.0 270 > th dose dependent rect. 19 7
65 205.13 temperature 15.0 10 > th dose independent rect. 15 18
66 205.16 atmosphere 1010.0 270 < th dose independent rect. 12 9
68 205.18 atmosphere 1000.0 270 > th dose independent rect. 20 15
70 205.24 humidity 90.0 10 < th dose independent rect. 2 7
86 205.70 temperature 30.0 1440 < th dose dependent rect. 15 3
88 205.75 wind 9.0 270 < th dose independent rect. 8 17
93 205.85 precipitation 0.1 270 < th dose independent rect. 11 9
94 205.85 precipitation 0.1 270 < th dose dependent rect. 11 9
100 205.95 humidity 50.0 270 > th dose independent rect. 20 15
103 205.96 temperature 10.0 270 > th dose independent rect. 20 15
106 205.96 temperature 10.0 1440 > th dose dependent rect. 15 3
107 205.96 temperature 10.0 1440 > th dose dependent rect. 14 5
109 205.97 wind 1.0 270 > th dose independent rect. 11 9
112 205.98 temperature 30.0 90 < th dose independent rect. 8 19
114 205.98 temperature 30.0 270 < th dose dependent rect. 7 18
116 206.01 wind 9.0 270 < th dose independent rect. 20 15
119 206.03 temperature 10.0 10 > th dose dependent rect. 14 8
140 206.18 precipitation 0.1 270 < th dose independent rect. 20 15
141 206.18 temperature 15.0 270 > th dose independent rect. 11 21
143 206.18 precipitation 0.1 270 < th dose dependent rect. 20 15
166 206.28 precipitation 0.1 270 < th dose independent rect. 1 7
169 206.28 precipitation 0.1 270 < th dose dependent rect. 1 7
198 206.44 wind 7.0 270 < th dose independent rect. 1 7
201 206.45 temperature 25.0 270 < th dose independent rect. 3 3
216 206.52 temperature 10.0 270 > th dose dependent rect. 1 7
226 206.55 temperature 10.0 270 > th dose independent rect. 1 7
228 206.55 temperature 30.0 270 < th dose independent rect. 1 7
229 206.55 humidity 50.0 270 > th dose independent rect. 1 7
231 206.55 atmosphere 995.0 270 > th dose independent rect. 1 7
232 206.55 atmosphere 1015.0 270 < th dose independent rect. 1 7
233 206.55 radiation 10.0 270 < th dose independent rect. 1 7
235 206.55 temperature 10.0 270 > th dose independent rect. 8 17
240 206.56 radiation 40.0 270 < th dose independent rect. 1 7
251 206.60 temperature 10.0 10 > th dose dependent rect. 5 17
271 206.69 temperature 30.0 270 < th dose independent rect. 20 15
286 206.75 temperature 30.0 270 < th dose independent rect. 6 21
308 206.79 atmosphere 995.0 270 > th dose independent rect. 8 17
313 206.80 radiation 40.0 270 < th dose dependent rect. 1 7
323 206.85 humidity 50.0 270 > th dose dependent rect. 7 19
330 206.88 wind 3.0 30 < th dose independent rect. 3 6
362 207.03 wind 1.0 270 > th dose independent rect. 7 18
367 207.06 atmosphere 995.0 270 > th dose independent rect. 11 9
369 207.07 radiation 40.0 90 < th dose independent rect. 13 9
374 207.08 wind 9.0 270 < th dose independent rect. 6 21
402 207.21 wind 9.0 30 < th dose dependent rect. 3 6
418 207.30 atmosphere 995.0 10 > th dose independent rect. 9 18
423 207.33 precipitation 0.1 270 < th dose independent rect. 8 17
428 207.33 precipitation 0.1 270 < th dose dependent rect. 8 17
430 207.35 radiation 10.0 270 < th dose independent rect. 1 18
434 207.36 wind 1.0 90 > th dose independent rect. 8 7
435 207.36 wind 9.0 270 < th dose independent rect. 12 8
445 207.39 radiation 1.0 270 < th dose dependent rect. 5 22
456 207.43 atmosphere 1015.0 270 < th dose dependent rect. 12 8
466 207.47 atmosphere 995.0 10 > th dose dependent rect. 3 6
467 207.49 humidity 80.0 270 > th dose independent rect. 19 7
473 207.51 humidity 90.0 270 < th dose independent rect. 12 8
499 207.54 precipitation 0.1 10 < th dose independent rect. 3 6
500 207.54 temperature 10.0 10 > th dose dependent rect. 3 6
501 207.54 precipitation 0.1 10 < th dose dependent rect. 3 6
507 207.57 wind 7.0 10 < th dose independent rect. 3 6
517 207.60 humidity 50.0 30 > th dose independent rect. 9 18
522 207.63 temperature 10.0 270 > th dose dependent rect. 2 5
546 207.70 precipitation 0.1 90 < th dose independent rect. 15 17
550 207.70 precipitation 0.1 90 < th dose dependent rect. 15 17
554 207.72 precipitation 0.1 270 < th dose independent rect. 3 3
555 207.72 precipitation 0.1 270 < th dose dependent rect. 3 3
568 207.75 temperature 10.0 10 > th dose independent rect. 3 6
570 207.75 temperature 30.0 10 < th dose independent rect. 3 6
571 207.75 humidity 50.0 10 > th dose independent rect. 3 6
573 207.75 atmosphere 995.0 10 > th dose independent rect. 3 6
574 207.75 atmosphere 1015.0 10 < th dose independent rect. 3 6
576 207.75 temperature 10.0 10 > th dose independent rect. 9 18
597 207.81 precipitation 0.1 10 < th dose independent rect. 9 18
600 207.81 precipitation 0.1 10 < th dose dependent rect. 9 18
609 207.86 wind 1.0 270 > th dose independent rect. 1 6
610 207.86 atmosphere 1015.0 90 < th dose dependent rect. 14 8
630 207.88 atmosphere 1010.0 270 < th dose independent rect. 3 3
642 207.92 wind 9.0 270 < th dose independent rect. 3 3
643 207.92 temperature 10.0 270 > th dose independent rect. 3 3
646 207.92 humidity 50.0 270 > th dose independent rect. 3 3
649 207.92 atmosphere 995.0 270 > th dose independent rect. 3 3
651 207.92 radiation 20.0 270 < th dose independent rect. 3 3
656 207.92 temperature 10.0 270 > th dose independent rect. 6 21
658 207.93 atmosphere 995.0 270 > th dose independent rect. 6 21
664 207.94 wind 9.0 10 < th dose independent rect. 9 18
676 207.96 radiation 40.0 90 < th dose independent rect. 15 17
677 207.96 humidity 50.0 270 > th dose independent rect. 7 18
689 207.97 wind 5.0 10 < th dose dependent rect. 5 4
718 208.05 atmosphere 995.0 90 > th dose independent rect. 8 7
721 208.05 atmosphere 1015.0 10 < th dose dependent rect. 14 8
738 208.09 radiation 40.0 270 < th dose dependent rect. 3 3
746 208.10 radiation 1.0 270 < th dose dependent rect. 17 10
801 208.19 temperature 10.0 90 > th dose independent rect. 8 7
802 208.19 atmosphere 1015.0 90 < th dose independent rect. 8 7
828 208.24 precipitation 0.1 90 < th dose independent rect. 8 7
829 208.24 precipitation 0.1 90 < th dose dependent rect. 8 7
830 208.24 wind 9.0 90 < th dose dependent rect. 1 8
836 208.26 temperature 10.0 1440 > th dose dependent sin 19 NA
848 208.30 precipitation 0.1 270 < th dose independent rect. 3 16
850 208.30 humidity 80.0 270 > th dose independent rect. 7 20
854 208.30 precipitation 0.1 270 < th dose dependent rect. 3 16
906 208.44 humidity 50.0 4320 > th dose independent rect. 4 6
934 208.50 wind 5.0 10 < th dose independent rect. 1 8
937 208.51 wind 9.0 270 < th dose independent rect. 7 7
952 208.53 precipitation 0.1 10 < th dose independent rect. 15 18
953 208.53 radiation 20.0 90 < th dose independent rect. 3 19
955 208.53 precipitation 0.1 10 < th dose dependent rect. 15 18
959 208.55 temperature 10.0 1440 > th dose independent rect. 4 6
963 208.55 atmosphere 995.0 1440 > th dose independent rect. 4 6
964 208.55 atmosphere 1015.0 1440 < th dose independent rect. 4 6
967 208.55 temperature 10.0 1440 > th dose independent rect. 10 18
998 208.62 temperature 30.0 1440 < th dose dependent sin 19 NA