BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0782800 Os01g0782800|Os01g0782800
         (133 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0782800                                                      276   3e-75
Os03g0207200  t-snare domain containing protein                    65   1e-11

>Os01g0782800 
          Length = 133

 Score =  276 bits (705), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MNHGHKRAVTANADIGFMDYVSSKCLSAAEVSSDGPCKTPLLKIMKTCAFTSALRSKPRV 60
           MNHGHKRAVTANADIGFMDYVSSKCLSAAEVSSDGPCKTPLLKIMKTCAFTSALRSKPRV
Sbjct: 1   MNHGHKRAVTANADIGFMDYVSSKCLSAAEVSSDGPCKTPLLKIMKTCAFTSALRSKPRV 60

Query: 61  NKSASVKCAADMVENSSEFSNGSGLRCLLLEKQEVFMYFDNDACSKKLHGWPGALIDNCR 120
           NKSASVKCAADMVENSSEFSNGSGLRCLLLEKQEVFMYFDNDACSKKLHGWPGALIDNCR
Sbjct: 61  NKSASVKCAADMVENSSEFSNGSGLRCLLLEKQEVFMYFDNDACSKKLHGWPGALIDNCR 120

Query: 121 GRNIKLDMGVLCN 133
           GRNIKLDMGVLCN
Sbjct: 121 GRNIKLDMGVLCN 133



>Os03g0207200 t-snare domain containing protein
          Length = 364

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 11/123 (8%)

Query: 2   NHGHKRAVTANADIGFMDYV-SSKCLSAAEVSSDGPCKTPLLKIMKTCAFTSALRSKPRV 60
           + GH+RA +A+ADIG    +  ++  S+A++  D   + PLLKI+KTCA TSAL+SKPR 
Sbjct: 206 HRGHRRAASAHADIGSWTMLCPNESESSADLPYDDKHQEPLLKIVKTCALTSALQSKPRT 265

Query: 61  NKS-ASVKCAA----DMVEN---SSEFSNGSGLRCLLLEKQEVFMYFDNDACSKKLHGWP 112
            K   SVK AA    D+ E    SS+   GS  RC    K  V    D    +KKL+G  
Sbjct: 266 KKKGGSVKWAAVDQQDVEETIPLSSQMGQGSD-RCFERSKSCVST-CDESTYNKKLYGCL 323

Query: 113 GAL 115
           GAL
Sbjct: 324 GAL 326



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,437,409
Number of extensions: 152276
Number of successful extensions: 313
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)