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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0207200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : t-snare domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.24 (0.036) R2 : 0.398
β1 : -2.4 (0.15) R2dD : 0.474 R2D : 0.0127
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.27 (0.162) R2dE : 0.38 R2E : -0.104
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.57 (0.0824) R2dN8 : 0.101 R2N8 : -0.0912
σ : 0.66
deviance : 200.54
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 9.404
memory length : 5466
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.52 0.659 6.28 -2.66 0.2 2.2 -0.568 -1.29 -0.639 7.31 8.985 5303 -- --
197.93 0.655 6.24 -2.39 0.196 2.27 -0.562 -- -0.565 7.32 7.298 5332 -- --
196.97 0.654 6.28 -2.68 0.214 2.18 -- -1.31 -0.641 5.81 9.231 5339 -- --
198.42 0.656 6.23 -2.39 0.222 2.25 -- -- -0.559 5.96 7.332 5289 -- --
199.06 0.657 6.29 -2.69 -- 2.2 -- -1.33 -0.651 -- 8.214 5486 -- --
282.55 0.788 6.13 -1.33 0.258 -- 0.387 -- -0.105 3.21 -- -- -- --
282.81 0.788 6.13 -1.34 0.273 -- -- -- -0.108 4.09 -- -- -- --
200.54 0.66 6.24 -2.4 -- 2.27 -- -- -0.57 -- 9.404 5466 -- --
299.03 0.805 6.14 -- 0.156 1.26 -- -- -0.145 4.17 11.64 1360 -- --
286.86 0.791 6.14 -1.32 -- -- -- -- -0.101 -- -- -- -- --
329.8 0.85 6.1 -- 0.247 -- -- -- 0.0405 4.18 -- -- -- --
300.09 0.807 6.15 -- -- 1.3 -- -- -0.145 -- 12.17 1279 -- --
333.11 0.852 6.1 -- -- -- -- -- 0.0459 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.98 humidity 60 43200 > th dose independent rect. 13 11
10 184.57 humidity 60 43200 < th dose independent rect. 13 11
16 184.87 humidity 70 43200 < th dose dependent rect. 17 1
17 184.89 humidity 60 43200 > th dose independent rect. 13 17
27 185.17 humidity 60 43200 < th dose independent rect. 17 1
41 185.53 radiation 40 14400 < th dose independent rect. 7 2
42 185.54 radiation 40 14400 < th dose independent rect. 3 6
43 185.55 radiation 40 14400 < th dose independent rect. 5 4
49 185.61 humidity 60 43200 > th dose independent sin 17 NA
60 185.73 radiation 40 14400 < th dose independent rect. 15 18
69 185.84 radiation 10 14400 < th dose independent rect. 17 14
93 186.24 humidity 60 43200 > th dose independent rect. 17 1
102 186.43 radiation 1 14400 > th dose dependent rect. 18 12
124 186.74 radiation 1 4320 > th dose dependent rect. 5 1
132 186.81 humidity 60 43200 < th dose independent sin 17 NA
194 187.55 humidity 60 43200 > th dose independent rect. 5 19
228 187.75 radiation 10 14400 > th dose dependent rect. 17 14
246 187.86 radiation 10 14400 < th dose independent rect. 17 1
316 188.30 humidity 60 43200 > th dose independent rect. 22 21
391 188.80 radiation 10 14400 < th dose independent rect. 17 11
395 188.83 radiation 10 14400 < th dose independent rect. 17 8
399 188.85 humidity 60 43200 > th dose independent no NA NA
419 188.91 radiation 20 4320 < th dose dependent rect. 5 1
446 189.14 radiation 20 14400 > th dose dependent rect. 6 2
489 189.46 humidity 60 43200 > th dose independent rect. 17 23
494 189.48 radiation 20 4320 < th dose dependent rect. 3 3
512 189.58 humidity 60 43200 > th dose independent rect. 8 1
522 189.65 humidity 60 43200 < th dose independent rect. 8 1
523 189.65 radiation 10 14400 < th dose independent rect. 3 4
542 189.74 radiation 20 4320 < th dose dependent rect. 1 5
550 189.82 humidity 60 43200 < th dose independent rect. 5 14
574 189.98 humidity 60 43200 < th dose independent rect. 5 19
641 190.33 radiation 20 4320 < th dose dependent rect. 23 7
663 190.38 radiation 20 4320 < th dose dependent rect. 20 10
709 190.65 humidity 60 43200 < th dose independent rect. 22 20
729 190.72 wind 9 43200 > th dose dependent rect. 12 19
749 190.82 humidity 50 43200 > th dose independent rect. 19 17
775 190.93 wind 9 43200 > th dose independent rect. 14 17
802 191.09 wind 9 43200 > th dose independent sin 15 NA
810 191.12 wind 9 43200 > th dose independent rect. 12 20
821 191.18 wind 9 43200 < th dose independent rect. 14 17
855 191.33 radiation 1 14400 < th dose independent rect. 17 18
857 191.34 humidity 70 43200 < th dose dependent sin 17 NA
869 191.39 wind 9 43200 < th dose independent sin 15 NA
877 191.44 humidity 60 43200 < th dose independent no NA NA
883 191.48 wind 9 43200 > th dose independent rect. 10 21
896 191.53 humidity 80 43200 < th dose dependent rect. 6 13
911 191.65 humidity 50 43200 > th dose independent rect. 4 8
913 191.67 humidity 50 43200 > th dose independent rect. 2 10
922 191.69 wind 9 43200 < th dose independent rect. 10 21
925 191.70 radiation 10 43200 < th dose dependent rect. 18 1
938 191.76 wind 9 43200 < th dose independent rect. 12 20
940 191.76 radiation 10 43200 < th dose dependent rect. 18 3
997 192.00 radiation 10 43200 < th dose dependent rect. 18 10
998 192.01 humidity 50 43200 < th dose independent rect. 19 17