Os01g0782800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0782800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.81 | 0.594 | 3.01 | 0.108 | 0.19 | 1.28 | 0.501 | 3.03 | 0.0561 | 4.94 | 19.15 | 4756 | -- | -- |
| 168.51 | 0.605 | 2.89 | 0.409 | 0.184 | 0.452 | 0.569 | -- | 0.158 | 4.75 | 21 | 6789 | -- | -- |
| 160.27 | 0.59 | 3.01 | 0.115 | 0.196 | 1.3 | -- | 3.06 | 0.0565 | 3.88 | 19.13 | 4759 | -- | -- |
| 168.69 | 0.605 | 2.89 | 0.415 | 0.212 | 0.477 | -- | -- | 0.15 | 4.31 | 20.8 | 5816 | -- | -- |
| 162.41 | 0.594 | 3.01 | 0.11 | -- | 1.3 | -- | 3.08 | 0.054 | -- | 19.1 | 4749 | -- | -- |
| 172.38 | 0.616 | 2.93 | 0.0751 | 0.182 | -- | 0.577 | -- | 0.000841 | 5.29 | -- | -- | -- | -- |
| 172.98 | 0.616 | 2.93 | 0.0744 | 0.193 | -- | -- | -- | -0.00232 | 4.07 | -- | -- | -- | -- |
| 170.5 | 0.608 | 2.9 | 0.391 | -- | 0.494 | -- | -- | 0.151 | -- | 20.62 | 4746 | -- | -- |
| 169.96 | 0.607 | 2.91 | -- | 0.247 | 0.288 | -- | -- | 0.0867 | 4.21 | 23.5 | 2718 | -- | -- |
| 175.01 | 0.618 | 2.93 | 0.0822 | -- | -- | -- | -- | 0.00283 | -- | -- | -- | -- | -- |
| 173.12 | 0.615 | 2.93 | -- | 0.195 | -- | -- | -- | -0.0106 | 4.07 | -- | -- | -- | -- |
| 172.05 | 0.611 | 2.92 | -- | -- | 0.325 | -- | -- | 0.0675 | -- | 24.8 | 3439 | -- | -- |
| 175.19 | 0.618 | 2.93 | -- | -- | -- | -- | -- | -0.0063 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.41 | wind | 7.0 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 2 | 154.52 | wind | 9.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 12 | 154.52 | wind | 9.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 24 | 155.01 | wind | 9.0 | 720 | > th | dose independent | rect. | 14 | 1 |
| 33 | 157.82 | wind | 7.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 35 | 157.94 | wind | 7.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 37 | 158.09 | wind | 5.0 | 10 | > th | dose independent | rect. | 24 | 2 |
| 41 | 158.09 | wind | 5.0 | 10 | > th | dose dependent | rect. | 24 | 2 |
| 51 | 158.50 | wind | 7.0 | 720 | > th | dose independent | rect. | 20 | 2 |
| 55 | 158.56 | wind | 5.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 63 | 158.74 | wind | 5.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 66 | 158.80 | wind | 7.0 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 90 | 159.22 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 23 | 1 |
| 91 | 159.22 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 184 | 160.35 | wind | 3.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 240 | 160.62 | wind | 9.0 | 30 | > th | dose independent | rect. | 19 | 7 |
| 249 | 160.63 | wind | 9.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 259 | 160.63 | wind | 9.0 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 271 | 160.64 | wind | 9.0 | 30 | > th | dose dependent | rect. | 19 | 7 |
| 335 | 160.67 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 380 | 160.70 | wind | 9.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 381 | 160.71 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 401 | 160.74 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 610 | 160.96 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 637 | 161.05 | wind | 5.0 | 720 | < th | dose independent | rect. | 21 | 8 |
| 666 | 161.18 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 671 | 161.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 693 | 161.23 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 6 |
| 766 | 161.34 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 22 |
| 827 | 161.42 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 14 |
| 829 | 161.42 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 17 |
| 872 | 161.45 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 904 | 161.52 | wind | 7.0 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 944 | 161.57 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 967 | 161.64 | wind | 9.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 970 | 161.65 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |