BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0775300 Os01g0775300|AK102133
(1252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0775300 TRAF-like domain containing protein 2392 0.0
Os05g0508700 TRAF-like domain containing protein 813 0.0
Os12g0597050 348 2e-95
Os12g0489100 Similar to Ubiquitin-specific protease 12 105 2e-22
Os12g0597200 Hypothetical protein 100 6e-21
>Os01g0775300 TRAF-like domain containing protein
Length = 1252
Score = 2392 bits (6199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1171/1252 (93%), Positives = 1171/1252 (93%)
Query: 1 MEHDMTVEDFIRTNGLGASGLIETNNQGVSTSSVSDCRSCEHVENGSPSTAPPFWDSDGE 60
MEHDMTVEDFIRTNGLGASGLIETNNQGVSTSSVSDCRSCEHVENGSPSTAPPFWDSDGE
Sbjct: 1 MEHDMTVEDFIRTNGLGASGLIETNNQGVSTSSVSDCRSCEHVENGSPSTAPPFWDSDGE 60
Query: 61 DDDPVTSGPRPSDLFGRYTWRIENFSKEKKREMKSEPFEAGGYKWYILVYPQGCDVSNHL 120
DDDPVTSGPRPSDLFGRYTWRIENFSKEKKREMKSEPFEAGGYKWYILVYPQGCDVSNHL
Sbjct: 61 DDDPVTSGPRPSDLFGRYTWRIENFSKEKKREMKSEPFEAGGYKWYILVYPQGCDVSNHL 120
Query: 121 SLFLCVANHDKLLPGWSHFAQFTIAVGNLDPKKVKYSDTLHKFWKKEHDWGWKKFMELSK 180
SLFLCVANHDKLLPGWSHFAQFTIAVGNLDPKKVKYSDTLHKFWKKEHDWGWKKFMELSK
Sbjct: 121 SLFLCVANHDKLLPGWSHFAQFTIAVGNLDPKKVKYSDTLHKFWKKEHDWGWKKFMELSK 180
Query: 181 IQDGFLVDDVLEIIAQVQVIREKVDRPFRCLDRPYRRELLRVYMTNIEQIYRRFVEERRS 240
IQDGFLVDDVLEIIAQVQVIREKVDRPFRCLDRPYRRELLRVYMTNIEQIYRRFVEERRS
Sbjct: 181 IQDGFLVDDVLEIIAQVQVIREKVDRPFRCLDRPYRRELLRVYMTNIEQIYRRFVEERRS 240
Query: 241 KLCKLIEDKMRWSSFRAFWLAIDQSTRHRMSTEKSDVILKIIVKHFFVEKEVTSTLVMDS 300
KLCKLIEDKMRWSSFRAFWLAIDQSTRHRMSTEKSDVILKIIVKHFFVEKEVTSTLVMDS
Sbjct: 241 KLCKLIEDKMRWSSFRAFWLAIDQSTRHRMSTEKSDVILKIIVKHFFVEKEVTSTLVMDS 300
Query: 301 LYTGLKALECQXXXXXXXGIIDSVDFVELPVPMVHVDVDMFVLAGDVIXXXXXXXXXXXX 360
LYTGLKALECQ GIIDSVDFVELPVPMVHVDVDMFVLAGDVI
Sbjct: 301 LYTGLKALECQSKSKSKKGIIDSVDFVELPVPMVHVDVDMFVLAGDVIALLERAALEPLP 360
Query: 361 CQPVSPKDDKCSQSRTKDGSSGEVNKVSIEREERRLTELGQKIIETFALSHIFSGIEVAY 420
CQPVSPKDDKCSQSRTKDGSSGEVNKVSIEREERRLTELGQKIIETFALSHIFSGIEVAY
Sbjct: 361 CQPVSPKDDKCSQSRTKDGSSGEVNKVSIEREERRLTELGQKIIETFALSHIFSGIEVAY 420
Query: 421 QEAVALKRQXXXXXXXXXXXXXXXXMKGKRGSTTEXXXXXXXXXXXXXXXXXXXXXXDRE 480
QEAVALKRQ MKGKRGSTTE DRE
Sbjct: 421 QEAVALKRQEELIREEEEAWLLENEMKGKRGSTTEKDKRAKKKQAKQKKNNRKVKDKDRE 480
Query: 481 EKCDSNFPERSQDENTIHDREDSKQAGQISMKVDTSEEGASDVSDNLDGSIEIQKKHSTM 540
EKCDSNFPERSQDENTIHDREDSKQAGQISMKVDTSEEGASDVSDNLDGSIEIQKKHSTM
Sbjct: 481 EKCDSNFPERSQDENTIHDREDSKQAGQISMKVDTSEEGASDVSDNLDGSIEIQKKHSTM 540
Query: 541 ENKSLSCSSESATMNNAQGKINNLLESKDQISRNRGKARSRSTSNMNITEDVDDLPSSTT 600
ENKSLSCSSESATMNNAQGKINNLLESKDQISRNRGKARSRSTSNMNITEDVDDLPSSTT
Sbjct: 541 ENKSLSCSSESATMNNAQGKINNLLESKDQISRNRGKARSRSTSNMNITEDVDDLPSSTT 600
Query: 601 SSDRNTSGCGPAPKLDQETVLLTLKDRLRKLGQRLHEKEIEGRKLLQAHLXXXXXXXXXX 660
SSDRNTSGCGPAPKLDQETVLLTLKDRLRKLGQRLHEKEIEGRKLLQAHL
Sbjct: 601 SSDRNTSGCGPAPKLDQETVLLTLKDRLRKLGQRLHEKEIEGRKLLQAHLEKKAAAESAT 660
Query: 661 XXXXXXXXXXXXXXPEVLKSPDQSSVTISDADINASPSKFGASKEVTPVTPTTILSTEPV 720
PEVLKSPDQSSVTISDADINASPSKFGASKEVTPVTPTTILSTEPV
Sbjct: 661 GSSSSLSSNSLEETPEVLKSPDQSSVTISDADINASPSKFGASKEVTPVTPTTILSTEPV 720
Query: 721 PTVASTLSKDEPVLCEDHVSCSTPQIDTPITSNPPQVVKTVTLPSGMLLVGHAIQAPSRS 780
PTVASTLSKDEPVLCEDHVSCSTPQIDTPITSNPPQVVKTVTLPSGMLLVGHAIQAPSRS
Sbjct: 721 PTVASTLSKDEPVLCEDHVSCSTPQIDTPITSNPPQVVKTVTLPSGMLLVGHAIQAPSRS 780
Query: 781 PAPQVDRVSKAIAAPTKSPAPQVDKVSIAVPTPSKSPATQGEKVAKAILVPPKSLAPQVG 840
PAPQVDRVSKAIAAPTKSPAPQVDKVSIAVPTPSKSPATQGEKVAKAILVPPKSLAPQVG
Sbjct: 781 PAPQVDRVSKAIAAPTKSPAPQVDKVSIAVPTPSKSPATQGEKVAKAILVPPKSLAPQVG 840
Query: 841 KVAKTIPTPKQPAPLVDKVTSLDPVSKQMSSMSNSEAREAILPKKAAVLSVSQTPAISRP 900
KVAKTIPTPKQPAPLVDKVTSLDPVSKQMSSMSNSEAREAILPKKAAVLSVSQTPAISRP
Sbjct: 841 KVAKTIPTPKQPAPLVDKVTSLDPVSKQMSSMSNSEAREAILPKKAAVLSVSQTPAISRP 900
Query: 901 SSAPLFQVPRSTLPPTPAVQVPPMLSRSMTLAGRSRNEPSPSVPSYTAQTYRNAIIGKSN 960
SSAPLFQVPRSTLPPTPAVQVPPMLSRSMTLAGRSRNEPSPSVPSYTAQTYRNAIIGKSN
Sbjct: 901 SSAPLFQVPRSTLPPTPAVQVPPMLSRSMTLAGRSRNEPSPSVPSYTAQTYRNAIIGKSN 960
Query: 961 LDTASASLDHSTSFGQNVALSQPLSSYASAASAMVPPVGRNGQLPGKQGFMFGQGKSEAI 1020
LDTASASLDHSTSFGQNVALSQPLSSYASAASAMVPPVGRNGQLPGKQGFMFGQGKSEAI
Sbjct: 961 LDTASASLDHSTSFGQNVALSQPLSSYASAASAMVPPVGRNGQLPGKQGFMFGQGKSEAI 1020
Query: 1021 DNWNPWKGDSNANKYMWKDDSPYHQMTKGDAHTQSWRDNSYQQAGCSGTGEQGEFGGLQY 1080
DNWNPWKGDSNANKYMWKDDSPYHQMTKGDAHTQSWRDNSYQQAGCSGTGEQGEFGGLQY
Sbjct: 1021 DNWNPWKGDSNANKYMWKDDSPYHQMTKGDAHTQSWRDNSYQQAGCSGTGEQGEFGGLQY 1080
Query: 1081 RQFQREIPTNLVSYQLPGPVGEEFPHLDIINDLLEEEQSSGSMAEPTLHGYHTLGLPYSS 1140
RQFQREIPTNLVSYQLPGPVGEEFPHLDIINDLLEEEQSSGSMAEPTLHGYHTLGLPYSS
Sbjct: 1081 RQFQREIPTNLVSYQLPGPVGEEFPHLDIINDLLEEEQSSGSMAEPTLHGYHTLGLPYSS 1140
Query: 1141 RGNLVDSEVTSISSSGRLNLADHYYDEGYPMAYDRLNALYRLREGQNSTLDAYSNGRMDS 1200
RGNLVDSEVTSISSSGRLNLADHYYDEGYPMAYDRLNALYRLREGQNSTLDAYSNGRMDS
Sbjct: 1141 RGNLVDSEVTSISSSGRLNLADHYYDEGYPMAYDRLNALYRLREGQNSTLDAYSNGRMDS 1200
Query: 1201 ITSKPWLHNFSNPAVNLGVNPNGFSQQMGNYTNLGSGRVNGEHLYRHANGQW 1252
ITSKPWLHNFSNPAVNLGVNPNGFSQQMGNYTNLGSGRVNGEHLYRHANGQW
Sbjct: 1201 ITSKPWLHNFSNPAVNLGVNPNGFSQQMGNYTNLGSGRVNGEHLYRHANGQW 1252
>Os05g0508700 TRAF-like domain containing protein
Length = 771
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/756 (59%), Positives = 521/756 (68%), Gaps = 47/756 (6%)
Query: 26 NQGVSTSSVSDCRSCEHVENGSPSTAPPFWDSDGEDDDPVTSGPRPSDLFGRYTWRIENF 85
++ +S S+S+ RSCE VE+ SPST+PPFWD+DG+ GP+PSDLFGRYTWRIENF
Sbjct: 21 DRSLSGESLSEWRSCEQVESESPSTSPPFWDTDGD---DDDPGPKPSDLFGRYTWRIENF 77
Query: 86 SKEKKREMKSEPFEAGGYKWYILVYPQGCDVSNHLSLFLCVANHDKLLPGWSHFAQFTIA 145
SKEKKREMKSEPFEAGGYKWYILVYPQGCDVSNHLSLFLCVANHDKLLPGWSHFAQFTIA
Sbjct: 78 SKEKKREMKSEPFEAGGYKWYILVYPQGCDVSNHLSLFLCVANHDKLLPGWSHFAQFTIA 137
Query: 146 VGNLDPKKVKYSDTLHKFWKKEHDWGWKKFMELSKIQDGFLVDDVLEIIAQVQVIREKVD 205
VGN+DPKKVKYSDTLHKFWKKEHDWGWKKFMELSKIQDGFLVDDVLEIIAQVQVIREKVD
Sbjct: 138 VGNIDPKKVKYSDTLHKFWKKEHDWGWKKFMELSKIQDGFLVDDVLEIIAQVQVIREKVD 197
Query: 206 RPFRCLDRPYRRELLRVYMTNIEQIYRRFVEERRSKLCKLIEDKMRWSSFRAFWLAIDQS 265
+PFRCLDRPYRRELLRVY TNIE IYRRFVEERR+KL KLIEDKMRWSSF AFW AID S
Sbjct: 198 KPFRCLDRPYRRELLRVYTTNIESIYRRFVEERRNKLSKLIEDKMRWSSFCAFWSAIDPS 257
Query: 266 TRHRMSTEKSDVILKIIVKHFFVEKEVTSTLVMDSLYTGLKALECQXXXXXXXGIIDSVD 325
TRHRMS EK+DVILK++VKHFFVEKEVTSTLVMDSLYTGLK LE Q I D
Sbjct: 258 TRHRMSREKTDVILKVLVKHFFVEKEVTSTLVMDSLYTGLKVLEYQSKGKKGRTI---AD 314
Query: 326 FVELPVPMVHVDVDMFVLAGDVIXXXXXXXXXXXXCQPVSPKDDKCSQSRTKDGSSGEVN 385
ELP PM+HVD+DMFVLA DVI CQPVSPKDDKCSQSR KDG+SGEVN
Sbjct: 315 LDELPAPMIHVDMDMFVLASDVIDLLERAALEPLPCQPVSPKDDKCSQSRMKDGASGEVN 374
Query: 386 KVSIEREERRLTELGQKIIETFALSHIFSGIEVAYQEAVALKRQXXXXXXXXXXX-XXXX 444
K+S+EREERRLTELG+KI+ETF LSHIFSGIEVAYQEAVALKRQ
Sbjct: 375 KISMEREERRLTELGRKILETFVLSHIFSGIEVAYQEAVALKRQEELIREEEEEAWLLGN 434
Query: 445 XMKGKR-GSTTEXXXXXXXXXXXXXXXXXXXXXXDREEKCDSNFPERSQDENTIHDRE-- 501
MKGKR G E +R+EK ++ ER DE I D +
Sbjct: 435 EMKGKRGGGANEKDKRAKKKQAKQKKNNRKIKDKERDEKFEAKILERLHDETAIDDSDGL 494
Query: 502 DSKQAGQISMKVDTSEEGASDVSDNLD-------------------------GSIEIQKK 536
SKQA +++ KV+ EEGASD +LD G+ + KK
Sbjct: 495 SSKQAEEVTTKVENLEEGASDRQGDLDSSEIAHRPDSGDKYPRQMNGLSDVTGNAQKVKK 554
Query: 537 HSTMENKSLSCSSESATMNNAQGKINNLLESKDQISRNRGK-ARSRSTSNMNITEDVDDL 595
S+ME S ++S + + NNL +SK++++ NRGK R++ S ++ +E+ + +
Sbjct: 555 ASSMEANSPVFLADSVAASGTHSRGNNLSDSKNRMTPNRGKNQRNKGISIISFSEEGEGI 614
Query: 596 PSSTT-SSDRNTSGCGPAPKLDQETVLLTLKDRLRKLGQRLHEKEIEGRKLLQAHLXXXX 654
PSS+T S R +S CG + KLDQ+TVLLTLKD+LRKLGQRLHEK +EGRKLLQAH
Sbjct: 615 PSSSTGGSARCSSSCGTSAKLDQDTVLLTLKDKLRKLGQRLHEKNMEGRKLLQAHF---- 670
Query: 655 XXXXXXXXXXXXXXXXXXXXPEVLKSPDQSSVTISDADINASPSK-----FGASKEVTPV 709
P+V+KSP+QS+ +DA N +P+K ++E V
Sbjct: 671 EAMEAKTSGSSPSSSPLDETPDVVKSPEQSAEGTTDAKANGTPNKDEPVTNCVAEESVSV 730
Query: 710 TPTTILSTEPVPTVASTLSKDEPVLCEDHVSCSTPQ 745
P T STE + +A +K EPV +DHV T Q
Sbjct: 731 MPGT-KSTEALSGMALAKTKVEPVSNKDHVPKPTLQ 765
>Os12g0597050
Length = 249
Score = 348 bits (892), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 159/236 (67%), Positives = 194/236 (82%), Gaps = 5/236 (2%)
Query: 7 VEDFIRTNGLGASGLIETNNQGVSTSSVSDCRSCEHVENGSPSTAPPFWDSDGEDDDPVT 66
+ED+ ++ + ++ Q S S+++ RS E VENG+PST+P + SD +DDD
Sbjct: 6 IEDYTGDGRSSSTEELPSDQQSHSGESLAEWRSSEQVENGTPSTSPAY--SDSDDDD--- 60
Query: 67 SGPRPSDLFGRYTWRIENFSKEKKREMKSEPFEAGGYKWYILVYPQGCDVSNHLSLFLCV 126
GPRPS+L+G++TWRI+NFS+ KRE++S F+ GGYKWYIL+YPQGCDV NHLSLFLCV
Sbjct: 61 CGPRPSELYGKFTWRIDNFSQINKRELRSNSFDVGGYKWYILIYPQGCDVCNHLSLFLCV 120
Query: 127 ANHDKLLPGWSHFAQFTIAVGNLDPKKVKYSDTLHKFWKKEHDWGWKKFMELSKIQDGFL 186
ANHDKLLPGWSHFAQFTIAV N DPKK KYSDTLH+FWKKEHDWGWKKFMEL+K+ +GF+
Sbjct: 121 ANHDKLLPGWSHFAQFTIAVINRDPKKSKYSDTLHRFWKKEHDWGWKKFMELTKLHEGFV 180
Query: 187 VDDVLEIIAQVQVIREKVDRPFRCLDRPYRRELLRVYMTNIEQIYRRFVEERRSKL 242
VDDVL I AQVQVIREK DRPFRCLD YRREL+RVY++N+EQI RRF++ERRSKL
Sbjct: 181 VDDVLTIKAQVQVIREKADRPFRCLDGQYRRELVRVYLSNVEQICRRFIDERRSKL 236
>Os12g0489100 Similar to Ubiquitin-specific protease 12
Length = 551
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 78/117 (66%), Gaps = 5/117 (4%)
Query: 77 RYTWRIENFSKEKKREMKSEPFEAGGYKWYILVYPQGCDVSNHLSLFLCVANHDKLLPGW 136
R+TW IENF++ ++ SEPF GG+KW +L++P+G +V +H S++L VA+ L GW
Sbjct: 64 RFTWTIENFTRINGKKHYSEPFVVGGFKWRVLIFPKGNNV-DHFSMYLDVADSVNLPYGW 122
Query: 137 SHFAQFTIAVGN-LDPKKVKYSDTLHKFWKKEHDWGWKKFMELSKIQD---GFLVDD 189
+ +AQF++AV N + PK DT H+F +E DWG+ FM LS + D G+LV+D
Sbjct: 123 NRYAQFSLAVVNQIHPKYTIRKDTQHQFNARESDWGFTSFMPLSDLYDPSRGYLVND 179
>Os12g0597200 Hypothetical protein
Length = 308
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 151/332 (45%), Gaps = 33/332 (9%)
Query: 929 MTLAGRSRNEPSPSVPSYTAQTYRNAIIGKSNLDTASASLDHSTSFGQNVALSQPLSSYA 988
M+ GR NEPS S PSY ++YRNA++ +S++ ++S H TS Q VA SQ + S +
Sbjct: 1 MSAVGRLGNEPSASAPSYIPRSYRNAMMERSSV--GASSFTHQTSSEQRVAQSQSMFSLS 58
Query: 989 SAASAMVPPVGRNGQLPGKQGFMFGQGKSEAIDNWNPWKGDSNANKYMWKDDSPYHQMTK 1048
+ + +G N + +QG FG K E ++ W + ++
Sbjct: 59 PSILSPEHLIG-NDRSSLRQGLTFGTVKPETLNQWR-------------------EESSQ 98
Query: 1049 GDAHTQSWRDNSYQQAGCSGTGEQGEF---GGLQYRQFQREIPTNLVSYQLPGPVGEEFP 1105
+ + S N + S GE +F G + +Q EI +Q G V +EFP
Sbjct: 99 QASSSSSSSSNDHGAVSSSNGGEFEKFYLFGKPRSKQLS-EISARSTPFQPQGLVSDEFP 157
Query: 1106 HLDIINDLLEEEQSSGSMAEPTLHGYHTLGLPYSSRGN--LVDSEVTSISSSGRLNLADH 1163
HLDIINDLL +EQ + YS N D + + S + +
Sbjct: 158 HLDIINDLLNDEQCERRTLKVLQRSQQAFARQYSMPNNSSTPDYGMFAQSDPYLFDQPEQ 217
Query: 1164 YYDEGYPMAYDRLNALYR-LREGQNSTLD--AYSNGRMDSITSKPWLHNFSNPAV-NLGV 1219
YYDE P Y+ LN R LRE S D +YSNG+ D + W + ++ ++ N G
Sbjct: 218 YYDEEIPRFYNSLNGTSRGLRERSYSHFDLPSYSNGQFDDMMMNQWPYGQTDLSLPNFGA 277
Query: 1220 NPNGFSQQMGNYTNLGSGRVNGEHLYRHANGQ 1251
+ NG+ Q +Y N +G ++ YR ANG
Sbjct: 278 DMNGYPYQSSDYPNSANG-LSRYPPYRPANGH 308
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 42,710,507
Number of extensions: 1970429
Number of successful extensions: 8053
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 8032
Number of HSP's successfully gapped: 5
Length of query: 1252
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1140
Effective length of database: 11,187,833
Effective search space: 12754129620
Effective search space used: 12754129620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 162 (67.0 bits)