Os01g0775300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os01g0775300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.58 | 0.223 | 10.4 | 1.53 | 0.529 | -1.03 | 0.0233 | 4.08 | 0.323 | 3.25 | 24.55 | 1310 | -- | -- |
| 28.59 | 0.249 | 10.4 | 0.676 | 0.524 | -0.732 | 0.0706 | -- | 0.224 | 3.59 | 19.77 | 8429 | -- | -- |
| 22.46 | 0.221 | 10.3 | 1.52 | 0.525 | -1.01 | -- | 3.82 | 0.364 | 3.19 | 23.69 | 1307 | -- | -- |
| 27.8 | 0.246 | 10.4 | 0.803 | 0.472 | -0.979 | -- | -- | 0.257 | 3.14 | 15.86 | 9226 | -- | -- |
| 30.95 | 0.259 | 10.3 | 1.66 | -- | -1.14 | -- | 4.65 | 0.371 | -- | 24.5 | 1765 | -- | -- |
| 43.63 | 0.31 | 10.5 | 0.225 | 0.435 | -- | 0.112 | -- | -0.0529 | 3.62 | -- | -- | -- | -- |
| 43.67 | 0.309 | 10.5 | 0.223 | 0.436 | -- | -- | -- | -0.0536 | 3.62 | -- | -- | -- | -- |
| 34.06 | 0.273 | 10.5 | 0.455 | -- | -1.13 | -- | -- | 0.115 | -- | 15.31 | 9064 | -- | -- |
| 34.83 | 0.275 | 10.5 | -- | 0.439 | -0.489 | -- | -- | 0.0718 | 3.62 | 23.39 | 7730 | -- | -- |
| 54.23 | 0.344 | 10.5 | 0.241 | -- | -- | -- | -- | -0.042 | -- | -- | -- | -- | -- |
| 44.98 | 0.314 | 10.5 | -- | 0.44 | -- | -- | -- | -0.0784 | 3.61 | -- | -- | -- | -- |
| 39.03 | 0.292 | 10.5 | -- | -- | -0.807 | -- | -- | 0.0367 | -- | 22.1 | 6260 | -- | -- |
| 55.76 | 0.349 | 10.5 | -- | -- | -- | -- | -- | -0.0687 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 7 | 22.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 27 | 22.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 30 | 22.38 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 114 | 22.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 237 | 23.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 239 | 23.08 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 303 | 23.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 331 | 23.41 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 365 | 23.57 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 374 | 23.62 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 400 | 23.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 418 | 23.75 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 423 | 23.77 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 438 | 23.79 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 439 | 23.79 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 489 | 23.88 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 500 | 23.90 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 522 | 23.93 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 529 | 23.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 560 | 23.98 | wind | 3 | 43200 | > th | dose dependent | sin | 0 | NA |
| 580 | 24.01 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 582 | 24.01 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 592 | 24.03 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 593 | 24.03 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 617 | 24.06 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 618 | 24.06 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 625 | 24.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 649 | 24.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 650 | 24.10 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 652 | 24.10 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 732 | 24.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 734 | 24.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 737 | 24.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 785 | 24.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 796 | 24.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 822 | 24.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 902 | 24.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 932 | 24.39 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 968 | 24.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 973 | 24.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |