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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0597200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.045) R2 : 0.0921
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.13 (0.634) R2dE : 0.0847 R2E : 0.0854
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.153 (0.0948) R2dN8 : 0.00668 R2N8 : 0.0074
σ : 0.845
deviance : 328.94
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 89
memory length : 88
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.68
open length of G : 2.78

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
320.95 0.842 3.25 0.394 0.239 4.78 0.176 -3.52 -0.104 19.9 89.02 95 2.97 2.18
322.02 0.836 3.25 0.387 0.236 4.6 0.0897 -- -0.109 19.6 89 94 2.88 2.25
320.98 0.834 3.25 0.386 0.243 4.75 -- -3.58 -0.105 19.5 89 94 2.95 2.25
321.73 0.835 3.25 0.397 0.241 4.19 -- -- -0.106 19.5 89.17 87 2.7 2.78
324.05 0.838 3.24 0.387 -- 4.61 -- -3.35 -0.105 -- 89 88 2.93 2.4
352.73 0.88 3.25 0.428 0.177 -- 0.286 -- -0.138 21.9 -- -- -- --
352.98 0.88 3.25 0.418 0.182 -- -- -- -0.138 21.2 -- -- -- --
324.88 0.839 3.24 0.404 -- 4.18 -- -- -0.108 -- 89 86 2.66 2.82
325.86 0.841 3.26 -- 0.242 4.25 -- -- -0.147 19.7 89.02 87 2.68 2.8
354.9 0.88 3.25 0.419 -- -- -- -- -0.139 -- -- -- -- --
357.59 0.885 3.26 -- 0.182 -- -- -- -0.185 21.3 -- -- -- --
328.94 0.845 3.25 -- -- 4.13 -- -- -0.153 -- 89 88 2.68 2.78
359.53 0.885 3.26 -- -- -- -- -- -0.185 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 322.05 humidity 90 90 < th dose dependent rect. 3 2
2 322.96 humidity 90 90 < th dose dependent rect. 2 4
5 325.09 humidity 80 1440 > th dose independent rect. 3 1
6 325.18 humidity 80 1440 > th dose independent rect. 1 3
7 325.18 humidity 80 720 < th dose independent rect. 1 3
9 325.28 humidity 80 720 < th dose dependent rect. 1 3
11 325.31 humidity 80 720 < th dose independent rect. 2 1
13 325.31 humidity 80 720 < th dose dependent rect. 2 1
25 325.69 humidity 80 90 < th dose independent rect. 2 4
26 325.70 temperature 20 30 < th dose dependent rect. 3 8
36 326.26 temperature 20 30 < th dose dependent rect. 3 3
103 328.68 temperature 20 30 < th dose dependent rect. 3 17
314 332.57 temperature 20 30 < th dose dependent sin 1 NA
346 333.27 temperature 20 90 < th dose independent rect. 2 3
347 333.28 humidity 90 10 < th dose independent rect. 3 1
350 333.32 humidity 80 10 < th dose independent rect. 2 4
373 333.58 wind 5 1440 > th dose dependent rect. 19 1
394 333.76 temperature 20 270 < th dose dependent rect. 24 4
446 334.32 temperature 20 10 < th dose independent rect. 3 3
572 335.39 temperature 20 10 < th dose independent rect. 3 8
609 335.81 temperature 20 270 < th dose independent rect. 24 20
622 335.94 wind 5 1440 > th dose independent rect. 18 5
636 336.08 temperature 20 270 < th dose independent rect. 24 10
655 336.23 temperature 20 270 < th dose independent rect. 24 4
664 336.27 wind 5 1440 < th dose independent rect. 18 5
725 336.74 humidity 80 720 < th dose independent sin 8 NA
764 336.92 wind 5 1440 < th dose independent rect. 21 2
788 337.02 wind 5 1440 > th dose independent rect. 21 2
819 337.14 temperature 20 90 < th dose independent rect. 2 17
849 337.31 temperature 20 90 < th dose independent rect. 2 19
881 337.52 temperature 20 1440 > th dose independent rect. 18 1
893 337.60 wind 5 1440 > th dose independent rect. 19 1
896 337.62 temperature 20 10 < th dose independent rect. 3 16
922 337.73 wind 5 1440 > th dose dependent rect. 17 8
982 338.00 wind 5 1440 > th dose dependent rect. 17 11