BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0761000 Os01g0761000|J065091N13
         (151 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0761000  Conserved hypothetical protein                      235   1e-62
Os07g0469100  Similar to Thylakoid membrane phosphoprotein 1...    76   8e-15

>Os01g0761000 Conserved hypothetical protein
          Length = 151

 Score =  235 bits (599), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 123/151 (81%)

Query: 1   MASXXXXXXXXXXXXXGGSESITGNLPMLPAVPSTRFVSGRMRSRNVVAAKAAQDSSEPS 60
           MAS             GGSESITGNLPMLPAVPSTRFVSGRMRSRNVVAAKAAQDSSEPS
Sbjct: 1   MASALAVARPAALVPRGGSESITGNLPMLPAVPSTRFVSGRMRSRNVVAAKAAQDSSEPS 60

Query: 61  SGSVVKYVQSSFSSPEDXXXXXXXXXXXXXXXWASINLVEVIDKLPVLPLLFELIGILVA 120
           SGSVVKYVQSSFSSPED               WASINLVEVIDKLPVLPLLFELIGILVA
Sbjct: 61  SGSVVKYVQSSFSSPEDLFALAGIGFAGIAALWASINLVEVIDKLPVLPLLFELIGILVA 120

Query: 121 WLFIYQNLLFKPDREKFLNNIKSSVSRVLGQ 151
           WLFIYQNLLFKPDREKFLNNIKSSVSRVLGQ
Sbjct: 121 WLFIYQNLLFKPDREKFLNNIKSSVSRVLGQ 151



>Os07g0469100 Similar to Thylakoid membrane phosphoprotein 14 kDa, chloroplast
           precursor
          Length = 150

 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%)

Query: 31  AVPSTRFVSGRMRSRNVVAAKAAQDSSEPSSGSVVKYVQSSFSSPEDXXXXXXXXXXXXX 90
           AV +T    G   SR V    A    SE     VVK  Q +++  ED             
Sbjct: 28  AVAATGIKYGLRASRGVAIRAADGTGSETEVPEVVKAAQDAWAKVEDKYAVTAIGVAALV 87

Query: 91  XXWASINLVEVIDKLPVLPLLFELIGILVAWLFIYQNLLFKPDREKFLNNIKSSVSRVLG 150
             W +I  ++ ID+LP+LP + EL+GI     F Y+NL+F+PDRE  ++ IKS+ + + G
Sbjct: 88  GLWTAIGAIKAIDRLPLLPGVLELVGIGYTGWFTYRNLIFQPDREALVSKIKSTYNEITG 147



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,783,477
Number of extensions: 121742
Number of successful extensions: 359
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 2
Length of query: 151
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 59
Effective length of database: 12,232,113
Effective search space: 721694667
Effective search space used: 721694667
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)