BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0753000 Os01g0753000|J065005C23
(216 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0753000 Colicin E3, catalytic domain containing protein 422 e-119
Os05g0515700 Colicin E3, catalytic domain containing protein 305 2e-83
>Os01g0753000 Colicin E3, catalytic domain containing protein
Length = 216
Score = 422 bits (1085), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/216 (93%), Positives = 202/216 (93%)
Query: 1 INRWFISIIAELFDLYIFEGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQ 60
INRWFISIIAELFDLYIFEGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQ
Sbjct: 1 INRWFISIIAELFDLYIFEGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQ 60
Query: 61 VMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINDCDAFALYRLEFXXXXXXXXXXXXXXCN 120
VMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINDCDAFALYRLEF CN
Sbjct: 61 VMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINDCDAFALYRLEFKSSDAKKTAKSKLACN 120
Query: 121 PLNEIQQQMVRLSADSPVENKRSARSRTKANPNDINSNIYLVQNTTVQGSIPNAYQAVSQ 180
PLNEIQQQMVRLSADSPVENKRSARSRTKANPNDINSNIYLVQNTTVQGSIPNAYQAVSQ
Sbjct: 121 PLNEIQQQMVRLSADSPVENKRSARSRTKANPNDINSNIYLVQNTTVQGSIPNAYQAVSQ 180
Query: 181 PDQMTYLNGNVVYGPHLPYGYSTERSDFYWSSNDGA 216
PDQMTYLNGNVVYGPHLPYGYSTERSDFYWSSNDGA
Sbjct: 181 PDQMTYLNGNVVYGPHLPYGYSTERSDFYWSSNDGA 216
>Os05g0515700 Colicin E3, catalytic domain containing protein
Length = 641
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 152/239 (63%), Positives = 169/239 (70%), Gaps = 34/239 (14%)
Query: 11 ELFDLYIFEGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKR 70
ELFDL + EGES+REWLFFD PRRAF+SGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKR
Sbjct: 402 ELFDLSLLEGESLREWLFFDTPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKR 461
Query: 71 SYYMDPQPSNSYEWHLYEYEINDCDAFALYRLEFXXXXXXXXXXXXXXCNPLNEIQQQMV 130
SYYMDPQPS++YEWHL+EYE ND DA ALYRLE+ +PL+EIQQQMV
Sbjct: 462 SYYMDPQPSSNYEWHLFEYETNDSDALALYRLEYKSSDTKRSVKSKLASSPLSEIQQQMV 521
Query: 131 RLSADSPVENKRSARSRTKANPNDINSNIYLVQNTTVQGSIPNAYQ-------------- 176
RLSADSPVE+KR+ARSR KAN D NSN Y NT VQ S NA+Q
Sbjct: 522 RLSADSPVESKRTARSRAKANQKDNNSNAYPALNTPVQVSASNAHQTMSVNTPDQVNVSN 581
Query: 177 --------------------AVSQPDQMTYLNGNVVYGPHLPYGYSTERSDFYWSSNDG 215
A SQ DQMT+L+G+VVYGPHLPYGYSTERSDFYW+ +DG
Sbjct: 582 AYQTMPLNTPNQPGPSNAYHAASQMDQMTFLDGSVVYGPHLPYGYSTERSDFYWNPSDG 640
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,232,051
Number of extensions: 283579
Number of successful extensions: 733
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)