Os05g0515700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Colicin E3, catalytic domain containing protein.
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Os05g0515700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Colicin E3, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.03 | 0.249 | 9.6 | 0.0795 | 0.771 | 0.512 | -0.1 | -0.536 | 0.236 | 1.87 | 72 | 867 | -- | -- |
| 28.37 | 0.248 | 9.6 | 0.0303 | 0.774 | 0.511 | 0.00161 | -- | 0.227 | 1.83 | 73.12 | 872 | -- | -- |
| 28.06 | 0.247 | 9.6 | 0.0804 | 0.773 | 0.509 | -- | -0.49 | 0.235 | 1.88 | 72.23 | 874 | -- | -- |
| 28.37 | 0.248 | 9.6 | 0.0309 | 0.773 | 0.504 | -- | -- | 0.228 | 1.85 | 73.11 | 872 | -- | -- |
| 36.29 | 0.281 | 9.6 | 0.0249 | -- | 0.536 | -- | -0.0281 | 0.204 | -- | 75.96 | 97 | -- | -- |
| 33.47 | 0.271 | 9.6 | -0.0311 | 0.731 | -- | -0.0105 | -- | 0.195 | 3.13 | -- | -- | -- | -- |
| 33.47 | 0.271 | 9.6 | -0.0309 | 0.731 | -- | -- | -- | 0.195 | 3.13 | -- | -- | -- | -- |
| 36.18 | 0.28 | 9.6 | 0.0236 | -- | 0.543 | -- | -- | 0.213 | -- | 75.92 | 127 | -- | -- |
| 28.37 | 0.248 | 9.6 | -- | 0.785 | 0.488 | -- | -- | 0.225 | 1.95 | 73.16 | 900 | -- | -- |
| 63.96 | 0.374 | 9.6 | 0.000253 | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
| 33.5 | 0.271 | 9.6 | -- | 0.731 | -- | -- | -- | 0.199 | 3.13 | -- | -- | -- | -- |
| 36.19 | 0.28 | 9.6 | -- | -- | 0.544 | -- | -- | 0.209 | -- | 75.97 | 127 | -- | -- |
| 63.96 | 0.373 | 9.6 | -- | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.94 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 27.25 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 40 | 27.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 80 | 28.04 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 84 | 28.08 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 98 | 28.18 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 121 | 28.26 | humidity | 60 | 720 | > th | dose dependent | rect. | 9 | 13 |
| 126 | 28.28 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 157 | 28.37 | humidity | 90 | 720 | < th | dose dependent | sin | 21 | NA |
| 166 | 28.40 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 7 |
| 224 | 28.49 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 293 | 28.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 345 | 28.60 | humidity | 50 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 354 | 28.61 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 16 |
| 380 | 28.63 | humidity | 60 | 720 | > th | dose dependent | sin | 20 | NA |
| 387 | 28.63 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 19 |
| 392 | 28.63 | humidity | 80 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 393 | 28.64 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 425 | 28.65 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 456 | 28.68 | humidity | 70 | 720 | > th | dose independent | rect. | 11 | 18 |
| 479 | 28.69 | humidity | 50 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 494 | 28.70 | humidity | 70 | 1440 | > th | dose independent | sin | 7 | NA |
| 496 | 28.70 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 22 |
| 538 | 28.71 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 22 |
| 553 | 28.72 | humidity | 80 | 720 | < th | dose dependent | no | NA | NA |
| 581 | 28.75 | humidity | 70 | 720 | > th | dose independent | sin | 16 | NA |
| 582 | 28.75 | humidity | 70 | 720 | > th | dose independent | rect. | 1 | 22 |
| 606 | 28.76 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 10 |
| 611 | 28.76 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 686 | 28.80 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 691 | 28.81 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 695 | 28.81 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 22 |
| 696 | 28.81 | humidity | 70 | 720 | > th | dose independent | rect. | 10 | 23 |
| 704 | 28.81 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 711 | 28.82 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 738 | 28.84 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 23 |
| 739 | 28.84 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 23 |
| 783 | 28.86 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 16 |
| 803 | 28.87 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 867 | 28.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 897 | 28.91 | humidity | 70 | 720 | > th | dose independent | no | NA | NA |
| 898 | 28.91 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 909 | 28.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 931 | 28.92 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 951 | 28.93 | humidity | 50 | 10 | > th | dose dependent | sin | 22 | NA |