Os01g0753000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Colicin E3, catalytic domain containing protein.
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Os01g0753000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Colicin E3, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.06 | 0.176 | 12.4 | 0.296 | 0.46 | 0.319 | 0.0082 | -0.376 | 0.0979 | 1.13 | 45.06 | 40 | -- | -- |
| 14.11 | 0.175 | 12.4 | 0.296 | 0.452 | 0.356 | -0.237 | -- | 0.101 | 0.95 | 51.92 | 80 | -- | -- |
| 14.06 | 0.175 | 12.4 | 0.296 | 0.46 | 0.319 | -- | -0.37 | 0.0977 | 1.13 | 45.21 | 40 | -- | -- |
| 14.32 | 0.176 | 12.4 | 0.303 | 0.455 | 0.378 | -- | -- | 0.103 | 0.821 | 70 | 115 | -- | -- |
| 16.76 | 0.191 | 12.4 | 0.317 | -- | 0.586 | -- | -0.202 | 0.197 | -- | 18.7 | 140 | -- | -- |
| 15.81 | 0.186 | 12.4 | 0.291 | 0.675 | -- | -0.237 | -- | 0.082 | 0.864 | -- | -- | -- | -- |
| 16.05 | 0.188 | 12.4 | 0.3 | 0.675 | -- | -- | -- | 0.0832 | 0.873 | -- | -- | -- | -- |
| 16.45 | 0.189 | 12.4 | 0.332 | -- | 0.573 | -- | -- | 0.113 | -- | 13.08 | 140 | -- | -- |
| 16.73 | 0.19 | 12.4 | -- | 0.465 | 0.377 | -- | -- | 0.0665 | 1.01 | 101.4 | 79 | -- | -- |
| 44.48 | 0.312 | 12.4 | 0.325 | -- | -- | -- | -- | 0.0958 | -- | -- | -- | -- | -- |
| 18.42 | 0.201 | 12.4 | -- | 0.68 | -- | -- | -- | 0.0498 | 0.892 | -- | -- | -- | -- |
| 18.95 | 0.203 | 12.4 | -- | -- | 0.559 | -- | -- | 0.0743 | -- | 10 | 136 | -- | -- |
| 47.27 | 0.321 | 12.4 | -- | -- | -- | -- | -- | 0.0598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.35 | radiation | 40 | 30 | < th | dose dependent | rect. | 18 | 23 |
| 7 | 13.67 | radiation | 20 | 30 | < th | dose independent | rect. | 18 | 23 |
| 21 | 13.97 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 22 |
| 24 | 14.00 | radiation | 40 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 27 | 14.02 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 28 | 14.02 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 10 |
| 31 | 14.03 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 35 | 14.04 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 36 | 14.04 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 76 | 14.09 | humidity | 90 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 80 | 14.10 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 12 |
| 81 | 14.10 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 86 | 14.10 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 87 | 14.10 | radiation | 40 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 93 | 14.11 | radiation | 40 | 30 | < th | dose dependent | no | NA | NA |
| 95 | 14.11 | humidity | 90 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 99 | 14.11 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 116 | 14.13 | radiation | 40 | 90 | < th | dose dependent | sin | 22 | NA |
| 130 | 14.14 | humidity | 70 | 10 | > th | dose independent | rect. | 18 | 23 |
| 131 | 14.14 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 222 | 14.15 | radiation | 20 | 270 | < th | dose independent | sin | 3 | NA |
| 225 | 14.15 | radiation | 1 | 90 | > th | dose dependent | sin | 22 | NA |
| 229 | 14.15 | radiation | 40 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 238 | 14.16 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 249 | 14.17 | radiation | 40 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 262 | 14.18 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 12 |
| 332 | 14.19 | humidity | 50 | 10 | > th | dose dependent | rect. | 18 | 23 |
| 334 | 14.19 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 338 | 14.19 | radiation | 40 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 339 | 14.20 | radiation | 20 | 270 | > th | dose independent | rect. | 8 | 7 |
| 495 | 14.21 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 498 | 14.21 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 499 | 14.22 | radiation | 40 | 270 | < th | dose independent | sin | 5 | NA |
| 581 | 14.23 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 23 |
| 597 | 14.24 | radiation | 20 | 30 | < th | dose independent | rect. | 7 | 23 |
| 633 | 14.24 | radiation | 1 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 638 | 14.25 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 11 |
| 760 | 14.26 | radiation | 20 | 270 | > th | dose independent | sin | 3 | NA |
| 819 | 14.28 | radiation | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 820 | 14.28 | radiation | 40 | 270 | < th | dose independent | rect. | 22 | 23 |
| 828 | 14.28 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 9 |
| 829 | 14.28 | radiation | 40 | 90 | < th | dose dependent | rect. | 9 | 11 |
| 841 | 14.29 | radiation | 30 | 270 | > th | dose independent | rect. | 9 | 5 |
| 883 | 14.29 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 888 | 14.30 | humidity | 80 | 90 | < th | dose independent | rect. | 8 | 10 |
| 898 | 14.30 | radiation | 40 | 270 | < th | dose independent | rect. | 24 | 23 |
| 930 | 14.31 | humidity | 70 | 10 | < th | dose independent | rect. | 9 | 10 |