BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0753000 Os01g0753000|J065005C23
         (216 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28520.1  | chr1:10029713-10031479 FORWARD LENGTH=487          192   9e-50
AT2G42400.1  | chr2:17654490-17656281 REVERSE LENGTH=451          168   2e-42

>AT1G28520.1 | chr1:10029713-10031479 FORWARD LENGTH=487
          Length = 486

 Score =  192 bits (489), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 122/190 (64%), Gaps = 18/190 (9%)

Query: 11  ELFDLYIFEGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKR 70
           ELFDL + E E++REWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQ+M +FGGLKR
Sbjct: 300 ELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKR 359

Query: 71  SYYMDPQPSNSYEWHLYEYEINDCDAFALYRLEFXXXXXXXXXXXXXXCNPLNEIQQQMV 130
           SYYMDPQP + +EWHLYEYEIN CDA ALYRLE                + + ++Q+QM 
Sbjct: 360 SYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLVDGKKTSKGKVSNDSVADLQKQMG 419

Query: 131 RLSADSPVE---------NKRSARSRTKANPNDINSNIYLVQNTTVQGSIPNAYQAVSQP 181
           RL+A+ P E         NKR  + R K +      N   VQNT  Q    N Y      
Sbjct: 420 RLTAEFPPENNTTNTTNNNKRCIKGRPKVSTKVATGN---VQNTVEQA---NDYGVG--- 470

Query: 182 DQMTYLNGNV 191
           ++  YL GN+
Sbjct: 471 EEFNYLVGNL 480



>AT2G42400.1 | chr2:17654490-17656281 REVERSE LENGTH=451
          Length = 450

 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 98/130 (75%), Gaps = 2/130 (1%)

Query: 10  AELFDLYIFEGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLK 69
           AELF L + EGE+IREWLFFDKPRRA++SGNRKQRSLPDY+GRGWHESRKQ+MK+  G K
Sbjct: 312 AELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQK 371

Query: 70  RSYYMDPQPSNSYEWHLYEYEINDCDAFALYRLEFXXXXXXXXXXXXXXCNPLNEIQQQM 129
           RSYYMDPQP   +EWHL+EY+IN+ DA ALYRLE                +PL ++Q++M
Sbjct: 372 RSYYMDPQPPGPFEWHLFEYQINESDACALYRLELKVGNGKKSPKGKISKDPLADLQKKM 431

Query: 130 --VRLSADSP 137
              ++++D P
Sbjct: 432 GQFKVASDKP 441



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,803,631
Number of extensions: 193893
Number of successful extensions: 478
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 122
Effective length of database: 8,529,465
Effective search space: 1040594730
Effective search space used: 1040594730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)