BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0752400 Os01g0752400|Os01g0752400
         (228 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0752400  Similar to Glucosidase II beta subunit precurs...   387   e-108
Os01g0276800  Virulence factor, pectin lyase fold family pro...   147   5e-36

>Os01g0752400 Similar to Glucosidase II beta subunit precursor (Protein kinase C
           substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H
           protein) (Vacuolar system associated protein-60)
           (VASAP-60)
          Length = 228

 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/228 (85%), Positives = 196/228 (85%)

Query: 1   MTTQPPSRRQVSSSXXXXXXXXXXXXXXXXXXXXXXXVSPQDEAYFAPAVIACRDGSGSF 60
           MTTQPPSRRQVSSS                       VSPQDEAYFAPAVIACRDGSGSF
Sbjct: 1   MTTQPPSRRQVSSSAPATLILLHLLAGAAGAAPPLVGVSPQDEAYFAPAVIACRDGSGSF 60

Query: 61  PKRRLNDGYCDCSDGTDEPGTSACPDGRFYCRNAGDTPRLLFSSVVNDKICDCCDGSDEY 120
           PKRRLNDGYCDCSDGTDEPGTSACPDGRFYCRNAGDTPRLLFSSVVNDKICDCCDGSDEY
Sbjct: 61  PKRRLNDGYCDCSDGTDEPGTSACPDGRFYCRNAGDTPRLLFSSVVNDKICDCCDGSDEY 120

Query: 121 ESGIRCPNTCRNINDVRKDDDVGINRKGVMKDDGVGMNIKDVAEDDHHDRKRTLDIEDLI 180
           ESGIRCPNTCRNINDVRKDDDVGINRKGVMKDDGVGMNIKDVAEDDHHDRKRTLDIEDLI
Sbjct: 121 ESGIRCPNTCRNINDVRKDDDVGINRKGVMKDDGVGMNIKDVAEDDHHDRKRTLDIEDLI 180

Query: 181 QKLKGLKMAVVIEIGLVICTFAVCFAXXXXXXXXXHYILKRLLSRVAG 228
           QKLKGLKMAVVIEIGLVICTFAVCFA         HYILKRLLSRVAG
Sbjct: 181 QKLKGLKMAVVIEIGLVICTFAVCFARRRTRTRRRHYILKRLLSRVAG 228



>Os01g0276800 Virulence factor, pectin lyase fold family protein
          Length = 614

 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 77/102 (75%)

Query: 38  VSPQDEAYFAPAVIACRDGSGSFPKRRLNDGYCDCSDGTDEPGTSACPDGRFYCRNAGDT 97
           + PQDEAYF   VI CRDGSG F + +LND +CDC DGTDEPGTSACP+G+FYC+NAG +
Sbjct: 30  IPPQDEAYFRGGVIRCRDGSGRFARDKLNDDFCDCPDGTDEPGTSACPEGKFYCQNAGHS 89

Query: 98  PRLLFSSVVNDKICDCCDGSDEYESGIRCPNTCRNINDVRKD 139
           P  +FSS VND ICDCCDGSDEY+S + C NTC       +D
Sbjct: 90  PITIFSSRVNDGICDCCDGSDEYDSNVTCKNTCWEAGKAARD 131



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,796,026
Number of extensions: 351748
Number of successful extensions: 633
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)