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Os01g0752400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glucosidase II beta subunit precursor (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein) (Vacuolar system associated protein-60) (VASAP-60).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0187) R2 : 0.101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.283 (0.0394) R2dN8 : 0.131 R2N8 : 0.101
σ : 0.353
deviance : 57.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.79 0.289 11.3 -1.03 0.00432 -0.463 0.571 0.958 0.0577 8.47 19.5 2053 -- --
37 0.283 11.3 -1.02 0.0298 -0.878 -0.658 -- 0.0596 20.7 18.5 3025 -- --
38.81 0.29 11.3 -1.03 0.00152 -0.443 -- 1.04 0.0537 19.9 19.4 2070 -- --
38.34 0.288 11.3 -1.01 0.0154 -0.897 -- -- 0.0518 19.2 18.4 3374 -- --
38.81 0.29 11.3 -1.02 -- -0.441 -- 1.04 0.0557 -- 19.42 2070 -- --
46.97 0.321 11.2 -0.602 0.0138 -- -0.612 -- 0.218 20.7 -- -- -- --
48.21 0.325 11.2 -0.581 0.0166 -- -- -- 0.219 19.5 -- -- -- --
38.36 0.288 11.3 -1.01 -- -0.899 -- -- 0.0539 -- 18.42 3379 -- --
55.96 0.348 11.2 -- 0.033 -0.321 -- -- 0.258 18.8 18.4 1450 -- --
48.22 0.324 11.2 -0.582 -- -- -- -- 0.218 -- -- -- -- --
57.12 0.354 11.2 -- 0.0239 -- -- -- 0.283 17.8 -- -- -- --
55.8 0.348 11.2 -- -- -0.176 -- -- 0.229 -- 22.4 1272 -- --
57.15 0.353 11.2 -- -- -- -- -- 0.283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.55 humidity 90.0 14400 > th dose independent rect. 23 1
3 35.98 humidity 90.0 14400 > th dose dependent rect. 5 2
4 36.22 humidity 90.0 14400 < th dose independent rect. 23 1
6 36.49 wind 1.0 14400 < th dose dependent rect. 24 1
7 36.50 humidity 90.0 14400 > th dose dependent rect. 23 17
23 36.69 humidity 90.0 14400 > th dose independent rect. 5 2
24 36.69 radiation 20.0 43200 < th dose dependent rect. 13 1
37 36.78 precipitation 0.1 43200 > th dose dependent rect. 17 5
40 36.79 precipitation 0.1 43200 > th dose dependent rect. 19 3
42 36.80 temperature 20.0 1440 > th dose independent rect. 6 1
44 36.81 radiation 30.0 14400 > th dose independent rect. 7 1
62 36.84 humidity 90.0 14400 > th dose dependent sin 5 NA
66 36.85 radiation 1.0 14400 > th dose independent rect. 18 11
72 36.88 temperature 20.0 1440 > th dose independent rect. 20 4
75 36.89 temperature 20.0 4320 > th dose independent rect. 20 2
83 36.90 humidity 90.0 14400 > th dose dependent rect. 23 2
87 36.92 temperature 20.0 4320 < th dose independent rect. 20 2
94 36.94 temperature 20.0 1440 < th dose independent rect. 5 2
104 36.98 humidity 90.0 14400 > th dose independent rect. 23 10
117 37.02 humidity 90.0 14400 > th dose dependent rect. 3 6
123 37.05 precipitation 0.1 43200 < th dose independent rect. 20 1
124 37.05 precipitation 0.1 43200 < th dose dependent rect. 20 1
125 37.05 precipitation 0.1 43200 > th dose dependent rect. 14 4
129 37.07 wind 3.0 43200 > th dose independent rect. 13 1
138 37.09 wind 3.0 43200 < th dose independent rect. 13 1
141 37.09 humidity 60.0 43200 < th dose dependent rect. 21 12
143 37.10 wind 9.0 43200 > th dose independent rect. 16 1
147 37.11 atmosphere 1015.0 43200 < th dose independent rect. 13 1
148 37.11 precipitation 0.1 43200 > th dose independent rect. 20 1
154 37.12 wind 9.0 43200 < th dose independent rect. 16 1
156 37.12 atmosphere 1015.0 43200 < th dose independent rect. 13 8
158 37.12 wind 1.0 43200 < th dose dependent rect. 11 1
164 37.13 atmosphere 1015.0 43200 > th dose independent rect. 12 1
165 37.13 radiation 10.0 43200 < th dose independent rect. 13 1
166 37.13 wind 9.0 43200 < th dose independent rect. 16 4
179 37.14 atmosphere 1015.0 43200 < th dose independent rect. 16 5
181 37.14 humidity 90.0 14400 > th dose independent rect. 23 14
183 37.15 precipitation 0.1 43200 < th dose independent rect. 19 3
185 37.15 precipitation 0.1 43200 < th dose dependent rect. 19 3
193 37.17 precipitation 0.1 43200 > th dose independent rect. 19 3
197 37.18 atmosphere 1015.0 43200 < th dose independent rect. 19 1
205 37.18 precipitation 0.1 43200 > th dose dependent rect. 20 1
212 37.19 precipitation 0.1 43200 > th dose independent rect. 15 3
216 37.20 precipitation 0.1 43200 < th dose independent rect. 15 3
218 37.20 atmosphere 1015.0 43200 > th dose independent rect. 12 9
221 37.20 precipitation 0.1 43200 < th dose dependent rect. 15 3
227 37.21 wind 1.0 14400 > th dose independent rect. 23 3
233 37.22 atmosphere 1015.0 43200 > th dose dependent rect. 12 2
247 37.26 wind 7.0 43200 > th dose independent rect. 22 1
254 37.26 radiation 40.0 43200 < th dose dependent rect. 18 11
257 37.27 radiation 20.0 1440 < th dose independent rect. 11 1
262 37.27 precipitation 0.1 43200 > th dose independent rect. 17 7
270 37.28 precipitation 0.1 43200 < th dose independent rect. 16 5
272 37.28 precipitation 0.1 43200 < th dose independent rect. 17 7
275 37.28 radiation 1.0 14400 < th dose independent rect. 18 11
277 37.28 precipitation 0.1 43200 < th dose dependent rect. 16 5
278 37.28 humidity 60.0 43200 < th dose dependent rect. 3 6
279 37.28 precipitation 0.1 43200 < th dose dependent rect. 17 7
284 37.29 wind 7.0 43200 < th dose independent rect. 22 1
287 37.29 precipitation 0.1 43200 > th dose independent rect. 16 5
301 37.30 radiation 1.0 14400 > th dose independent rect. 18 1
304 37.30 atmosphere 1015.0 43200 > th dose independent rect. 18 3
328 37.31 humidity 60.0 43200 < th dose dependent rect. 7 2
343 37.33 wind 1.0 43200 > th dose independent rect. 2 1
350 37.33 wind 1.0 4320 < th dose dependent rect. 6 1
372 37.35 humidity 70.0 43200 < th dose independent rect. 11 1
373 37.35 humidity 70.0 43200 > th dose independent rect. 10 2
374 37.35 wind 1.0 14400 < th dose independent rect. 23 3
405 37.38 humidity 90.0 14400 > th dose dependent rect. 12 19
426 37.40 precipitation 0.1 43200 > th dose independent rect. 13 11
446 37.42 precipitation 0.1 43200 < th dose independent rect. 13 11
449 37.42 precipitation 0.1 43200 < th dose dependent rect. 13 11
461 37.43 atmosphere 1015.0 43200 > th dose dependent rect. 11 13
476 37.45 humidity 90.0 14400 < th dose independent rect. 23 10
502 37.47 humidity 90.0 14400 < th dose independent rect. 5 2
505 37.47 wind 9.0 43200 > th dose independent rect. 16 4
545 37.50 atmosphere 1015.0 43200 > th dose dependent rect. 21 1
558 37.51 precipitation 0.1 43200 > th dose dependent rect. 16 1
576 37.52 precipitation 0.1 43200 > th dose dependent sin 18 NA
577 37.52 atmosphere 1015.0 43200 > th dose dependent rect. 19 5
594 37.53 atmosphere 1015.0 43200 > th dose dependent sin 18 NA
597 37.53 radiation 40.0 43200 < th dose dependent rect. 18 3
633 37.55 radiation 10.0 43200 < th dose independent rect. 17 1
656 37.56 humidity 90.0 14400 > th dose independent sin 7 NA
709 37.58 radiation 40.0 43200 < th dose dependent rect. 18 7
716 37.58 radiation 30.0 43200 > th dose dependent rect. 16 16
728 37.59 radiation 30.0 4320 < th dose independent rect. 16 16
743 37.60 atmosphere 1015.0 43200 < th dose independent sin 18 NA
748 37.60 radiation 10.0 43200 < th dose independent rect. 17 3
752 37.60 radiation 10.0 43200 < th dose independent rect. 17 8
791 37.61 radiation 30.0 14400 > th dose dependent rect. 7 1
849 37.63 humidity 70.0 43200 > th dose independent rect. 9 17
851 37.63 wind 9.0 43200 > th dose independent rect. 21 23
852 37.63 humidity 90.0 14400 > th dose dependent no NA NA
874 37.64 atmosphere 1015.0 43200 > th dose independent sin 18 NA
879 37.64 precipitation 0.1 43200 > th dose independent rect. 13 5
909 37.65 humidity 60.0 43200 < th dose independent rect. 20 13
911 37.65 humidity 70.0 43200 < th dose independent rect. 10 17
916 37.65 wind 9.0 43200 < th dose independent rect. 21 23
944 37.66 humidity 70.0 43200 < th dose independent rect. 23 16
945 37.66 wind 9.0 43200 > th dose independent rect. 2 18
953 37.66 atmosphere 1015.0 43200 > th dose dependent rect. 23 1
965 37.67 wind 1.0 43200 < th dose independent rect. 2 1