BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0752400 Os01g0752400|Os01g0752400
         (228 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42390.1  | chr2:17651381-17652509 REVERSE LENGTH=213          154   5e-38
AT5G56360.1  | chr5:22823586-22827950 REVERSE LENGTH=648          142   1e-34

>AT2G42390.1 | chr2:17651381-17652509 REVERSE LENGTH=213
          Length = 212

 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 108/173 (62%), Gaps = 19/173 (10%)

Query: 38  VSPQDEAYFAPAVIACRDGSGSFPKRRLNDGYCDCSDGTDEPGTSACPDGRFYCRNAGDT 97
           V P DE YF   VI C+DGS SF + RLND +CDC DGTDEPGTSACP+G+FYCRN G +
Sbjct: 28  VHPLDEKYFDSDVIKCKDGSKSFTRDRLNDNFCDCLDGTDEPGTSACPNGKFYCRNIGSS 87

Query: 98  PRLLFSSVVNDKICDCCDGSDEYESGIRCPNTCR---NINDVRKDDDVGINRKGVMKDDG 154
           P+ ++SS VND+ICDCCDGSDEYES I CPNTC    N+N + K      N K +    G
Sbjct: 88  PKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCIMGGNVNYIYKPRA---NLKSIHLQLG 144

Query: 155 VGMNIKDVAEDDHHDRKRTL-DIEDLIQKLKGLKMAVVIE---IGLVICTFAV 203
                       H     T+ +++D+++ L+G+K+   ++   IG ++  + +
Sbjct: 145 ---------STPHPKEFYTIGNLQDMVKNLQGMKLVFALQMVFIGFLVILWML 188



>AT5G56360.1 | chr5:22823586-22827950 REVERSE LENGTH=648
          Length = 647

 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 11/161 (6%)

Query: 38  VSPQDEAYF-APAVIACRDGSGSFPKRRLNDGYCDCSDGTDEPGTSACPDGRFYCRNAGD 96
           +SPQDE Y+ + + I C+DGS  F K +LND +CDCSDGTDEPGTSACP G+FYCRNAG 
Sbjct: 40  ISPQDEKYYKSSSEIKCKDGSKKFTKAQLNDDFCDCSDGTDEPGTSACPTGKFYCRNAGH 99

Query: 97  TPRLLFSSVVNDKICDCCDGSDEYESGIRCPNTCRNINDVRKDDDVGINRKGVMKDDGVG 156
           +P +LFSS VND ICDCCDGSDEY+  + C NTC       +++   + +K    + G+ 
Sbjct: 100 SPVILFSSRVNDGICDCCDGSDEYDGHVSCQNTCWEAGKAAREN---LKKKIETYNQGLV 156

Query: 157 MNIKDVAEDDHHDRKRTLDIEDLIQKLKGLKMAVVIEIGLV 197
           +  +++        +  + +E    +LK LK    I  GLV
Sbjct: 157 IRRQEI-------EQAKVGLEKDAAELKKLKSEQKILKGLV 190



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,791,531
Number of extensions: 212872
Number of successful extensions: 439
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)